Rn00577958_m1 Best Coverage

• Gene Symbol: Cdk5rap3
• Gene Name: CDK5 regulatory subunit associated protein 3
• Gene Aliases: C53
• Chromosome Location: Chr.10: 84780646 - 84789787 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cdk5rap3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_024488.1	NP_077814.1	2 - 3	138		68
GenBank mRNA	AF177476.1	-	2 - 3	138		68
	BC081793.1	-	1 - 2	60	7190258	68

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000003668.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cdk5rap3

Gene Ontology Categories:

Process(es)

regulation of cyclin-dependent protein serine/threonine kinase activity
regulation of mitotic cell cycle
brain development
cell proliferation
positive regulation of protein ubiquitination
negative regulation of NF-kappaB transcription factor activity
regulation of neuron differentiation
positive regulation of transcription from RNA polymerase II promoter
protein ufmylation
positive regulation of protein localization to nucleus
positive regulation of signal transduction by p53 class mediator
regulation of signal transduction involved in mitotic G2 DNA damage checkpoint
negative regulation of cellular protein catabolic process
positive regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Function(s)

cyclin binding
protein complex binding
ubiquitin-like protein ligase binding
MDM2/MDM4 family protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P15302	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P15302	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P15302	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P15302	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P15302	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700628262	-	-
Agilent Rat cDNA Microarray (G4105A)	700628262	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10940533	-	-
Affymetrix Rat Gene 1.1 ST Array	10940533	-	-
Rat Genome 230 2.0 Array	1367879_PM_at	-	-
Rat Genome 230 2.0 Array	1367879_at	-	-
Affymetrix HT Rat Focus Array	1367879_PM_at	-	-
Affymetrix HT Rat Focus Array	1367879_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000032697.rn.1	TC1000003668.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000032699.rn.1	TC1000003668.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000032696.rn.1	TC1000003668.rn.1	RTA TC
Rat Expression Set 230	1367879_PM_at	-	-
Rat Expression Set 230	1367879_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10940533	-	-
Rat Genome U34 Set	rc_AA799745_at	-	-
Rat Genome U34 Set	rc_AA799745_g_at	-	-
Rat Genome U34 Set	rc_AA998075_at	-	-
Rat Genome U34 Set	rc_AA945705_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21515584	-	-