Rn00578590_m1 Best Coverage

• Gene Symbol: Sigmar1
• Gene Name: sigma non-opioid intracellular receptor 1
• Gene Aliases: Oprs1
• Chromosome Location: Chr.5: 58121826 - 58124604 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sigmar1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_030996.1	NP_112258.1	3 - 4	483		73
GenBank mRNA	AF004218.1	-	3 - 4	483		73
	AF067769.1	-	3 - 4	535		73
	AF087827.1	-	3 - 4	488		73
	BC061978.1	-	3 - 4	472	5623693	73

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500002584.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sigmar1

Panther Classification:

Molecular Function -

transmembrane signal receptor

Gene Ontology Categories:

Process(es)

lipid transport
nervous system development
opioid receptor signaling pathway
regulation of neuron apoptotic process

Function(s)

receptor activity
opioid receptor activity
protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P609522	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P041323	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	655140	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	213113	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P041323	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P609522	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P609522	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P041323	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P609522	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P041323	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P609522	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P171634	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700505457	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	2182	-	-
Agilent Rat cDNA Microarray (G4105A)	700505457	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10876191	-	-
Affymetrix Rat Gene 1.0 ST Array	10876190	-	-
Affymetrix Rat Gene 1.0 ST Array	10876189	-	-
Affymetrix Rat Gene 1.0 ST Array	10876187	-	-
Affymetrix Rat Gene 1.0 ST Array	10876188	-	-
Affymetrix Rat Gene 1.0 ST Array	10876186	-	-
Affymetrix Rat Gene 1.1 ST Array	10876185	-	-
Rat Genome 230 2.0 Array	1386918_PM_a_at	-	-
Rat Genome 230 2.0 Array	1386918_a_at	-	-
Affymetrix HT Rat Focus Array	1386918_a_at	-	-
Affymetrix HT Rat Focus Array	1386918_PM_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR0500019075.rn.1	TC0500002584.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500019077.rn.1	TC0500002584.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500019076.rn.1	TC0500002584.rn.1	RTA TC
Rat Expression Set 230	1386918_PM_a_at	-	-
Rat Expression Set 230	1386918_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10876185	-	-
Rat Genome U34 Set	AF004218_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21267503	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1365626	-	-
RatRef-12 Expression BeadChip	ILMN_55721	-	-