Rn00579806_g1 Best Coverage

• Gene Symbol: Cirbp
• Gene Name: cold inducible RNA binding protein
• Gene Aliases: -
• Chromosome Location: Chr.7: 12400066 - 12405225 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cirbp
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031147.2	NP_112409.2	3 - 4	382		72
	XM_006241012.2	XP_006241074.1	3 - 4	387		72
	XM_006241013.2	XP_006241075.2	3 - 4	498		72
	XM_006241014.2	XP_006241076.1	3 - 4	387		72
	XM_006241015.2	XP_006241077.2	3 - 4	498		72
	XM_008765132.1	XP_008763354.1	3 - 4	498		72
GenBank mRNA	AB000362.1	-	2 - 3	231		72
	BC069219.1	-	3 - 4	382	6888887	72

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700002174.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cirbp

Gene Ontology Categories:

Process(es)

response to cold
response to UV
negative regulation of translation
stress granule assembly
positive regulation of translation
mRNA stabilization

Function(s)

nucleotide binding
mRNA 3'-UTR binding
translation repressor activity
poly(A) RNA binding
small ribosomal subunit rRNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P138790	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	255649	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	570738	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	99055	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P138790	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P138790	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P138790	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P138790	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	84476	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10900587	-	-
Affymetrix Rat Gene 1.0 ST Array	10900591	-	-
Affymetrix Rat Gene 1.0 ST Array	10900590	-	-
Affymetrix Rat Gene 1.0 ST Array	10900585	-	-
Affymetrix Rat Gene 1.0 ST Array	10900586	-	-
Affymetrix Rat Gene 1.0 ST Array	10900584	-	-
Affymetrix Rat Gene 1.0 ST Array	10900588	-	-
Affymetrix Rat Gene 1.0 ST Array	10900589	-	-
Affymetrix Rat Gene 1.1 ST Array	10900583	-	-
Rat Genome 230 2.0 Array	1369083_at	-	-
Rat Genome 230 2.0 Array	1385904_PM_at	-	-
Rat Genome 230 2.0 Array	1385904_at	-	-
Rat Genome 230 2.0 Array	1382809_PM_at	-	-
Rat Genome 230 2.0 Array	1382809_at	-	-
Rat Genome 230 2.0 Array	1369083_PM_at	-	-
Affymetrix HT Rat Focus Array	1385904_at	-	-
Affymetrix HT Rat Focus Array	1385904_PM_at	-	-
Affymetrix HT Rat Focus Array	1382809_PM_at	-	-
Affymetrix HT Rat Focus Array	1369083_PM_at	-	-
Affymetrix HT Rat Focus Array	1369083_at	-	-
Affymetrix HT Rat Focus Array	1382809_at	-	-
Affymetrix Rat Clariom S Assay	PSR0700017233.rn.1	TC0700002174.rn.1	RTA TC
Rat Expression Set 230	1369083_at	-	-
Rat Expression Set 230	1369083_PM_at	-	-
Rat Expression Set 230	1385904_PM_at	-	-
Rat Expression Set 230	1385904_at	-	-
Rat Expression Set 230	1382809_PM_at	-	-
Rat Expression Set 230	1382809_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10900583	-	-
Rat Genome U34 Set	AB000362_at	-	-
Rat Genome U34 Set	rc_AI175751_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21540261	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1369235	-	-
RatRef-12 Expression BeadChip	ILMN_49747	-	-