Rn00579821_m1 Best Coverage

• Gene Symbol: Psmc5
• Gene Name: proteasome (prosome, macropain) 26S subunit, ATPase, 5
• Gene Aliases: Sug1
• Chromosome Location: Chr.10: 94445877 - 94451811 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Psmc5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031149.1	NP_112411.1	2 - 3	107		80
GenBank mRNA	AB000491.1	-	2 - 3	107		80
	BC058462.1	-	2 - 3	103	6891005	80
	D83521.1	-	2 - 3	125		80
	FQ213263.1	-	2 - 3	124		80
	FQ213735.1	-	2 - 3	99		80
	FQ233831.1	-	2 - 3	110		80

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000001787.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Psmc5

Panther Classification:

Molecular Function -

protease

Gene Ontology Categories:

Process(es)

proteasome-mediated ubiquitin-dependent protein catabolic process
negative regulation of transcription, DNA-templated
positive regulation of inclusion body assembly

Function(s)

receptor binding
ATP binding
transcription factor binding
ATPase activity
TBP-class protein binding
thyrotropin-releasing hormone receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P12543	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	446079	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	7266	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	229021	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	33904	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	172407	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P12543	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P12543	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P12543	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P12543	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10739137	-	-
Affymetrix Rat Gene 1.0 ST Array	10739145	-	-
Affymetrix Rat Gene 1.0 ST Array	10739142	-	-
Affymetrix Rat Gene 1.0 ST Array	10739140	-	-
Affymetrix Rat Gene 1.0 ST Array	10739147	-	-
Affymetrix Rat Gene 1.0 ST Array	10739143	-	-
Affymetrix Rat Gene 1.0 ST Array	10739146	-	-
Affymetrix Rat Gene 1.0 ST Array	10739136	-	-
Affymetrix Rat Gene 1.0 ST Array	10739141	-	-
Affymetrix Rat Gene 1.0 ST Array	10739139	-	-
Affymetrix Rat Gene 1.0 ST Array	10739138	-	-
Affymetrix Rat Gene 1.1 ST Array	10739135	-	-
Rat Genome 230 2.0 Array	1367833_PM_at	-	-
Rat Genome 230 2.0 Array	1367833_at	-	-
Affymetrix HT Rat Focus Array	1367833_at	-	-
Affymetrix HT Rat Focus Array	1367833_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000016354.rn.1	TC1000001787.rn.1	RTA TC
Rat Expression Set 230	1367833_PM_at	-	-
Rat Expression Set 230	1367833_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10739135	-	-
Rat Genome U34 Set	AB000491_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21928539	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1354016	-	-
RatRef-12 Expression BeadChip	ILMN_67036	-	-