Rn00580247_m1 Best Coverage

• Gene Symbol: Fcna
• Gene Name: ficolin A
• Gene Aliases: Fcn1
• Chromosome Location: Chr.3: 2850006 - 2853230 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Fcna
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031348.2	NP_112638.2	5 - 6	420		131
	XM_008761614.1	XP_008759836.1	5 - 6	443		131
GenBank mRNA	AB026057.2	-	5 - 6	331		131
	BC088128.1	-	5 - 6	420		131
	FQ227647.1	-	5 - 6	440		131
	FQ234790.1	-	5 - 6	440		131

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300002694.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Fcna

Gene Ontology Categories:

Process(es)

complement activation, lectin pathway
cell surface pattern recognition receptor signaling pathway
G protein-coupled receptor signaling pathway
positive regulation of interleukin-8 production
innate immune response

Function(s)

carbohydrate binding
pattern recognition receptor activity
metal ion binding
carbohydrate derivative binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P780932	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	682309	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P780932	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P780932	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P780932	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P780932	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700543784	-	-
Agilent Rat cDNA Microarray (G4105A)	700543784	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10843582	-	-
Affymetrix Rat Gene 1.0 ST Array	10843585	-	-
Affymetrix Rat Gene 1.0 ST Array	10843580	-	-
Affymetrix Rat Gene 1.0 ST Array	10843579	-	-
Affymetrix Rat Gene 1.0 ST Array	10843581	-	-
Affymetrix Rat Gene 1.0 ST Array	10843583	-	-
Affymetrix Rat Gene 1.0 ST Array	10843587	-	-
Affymetrix Rat Gene 1.0 ST Array	10843576	-	-
Affymetrix Rat Gene 1.0 ST Array	10843584	-	-
Affymetrix Rat Gene 1.0 ST Array	10843577	-	-
Affymetrix Rat Gene 1.0 ST Array	10843586	-	-
Affymetrix Rat Gene 1.0 ST Array	10843578	-	-
Affymetrix Rat Gene 1.1 ST Array	10843575	-	-
Rat Genome 230 2.0 Array	1387794_at	-	-
Rat Genome 230 2.0 Array	1387794_PM_at	-	-
Affymetrix HT Rat Focus Array	1387794_PM_at	-	-
Affymetrix HT Rat Focus Array	1387794_at	-	-
Affymetrix Rat Clariom S Assay	PSR0300020202.rn.1	TC0300002694.rn.1	RTA TC
Rat Expression Set 230	1387794_at	-	-
Rat Expression Set 230	1387794_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10843575	-	-
Rat Genome U34 Set	rc_AI104596_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21616800	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1349211	-	-
RatRef-12 Expression BeadChip	ILMN_64679	-	-