Rn00580664_m1 Best Coverage

• Gene Symbol: Cdkn2a
• Gene Name: cyclin-dependent kinase inhibitor 2A
• Gene Aliases: Arf, INK4A, MTS1, p16, p16Cdkn2a, p19ARF
• Chromosome Location: Chr.5: 107823323 - 107832405 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cdkn2a
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031550.1	NP_113738.1	2 - 3	486		78
GenBank mRNA	AF474974.1	-		527		78
	AF474975.1	-		527		78
	AF474976.1	-	2 - 3	462		78
	AF474977.1	-	2 - 3	453		78
	AY679727.1	-		527		78
	AY679728.1	-	2 - 3	462		78
	L81167.1	-	2 - 3	486		78

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500003113.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Recommended Assay, Rattus norvegicus, Rat Tumor Metastasis Panel, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cdkn2a

Gene Ontology Categories:

Process(es)

regulation of cyclin-dependent protein serine/threonine kinase activity
G1/S transition of mitotic cell cycle
protein polyubiquitination
negative regulation of cell-matrix adhesion
transcription, DNA-templated
regulation of transcription, DNA-templated
rRNA processing
negative regulation of protein kinase activity
apoptotic process
activation of cysteine-type endopeptidase activity involved in apoptotic process
cell cycle arrest
Ras protein signal transduction
aging
cell aging
negative regulation of cell proliferation
epidermis development
apoptotic mitochondrial changes
rRNA transcription
response to organic substance
response to organonitrogen compound
regulation of G2/M transition of mitotic cell cycle
regulation of gene expression
response to organic cyclic compound
cerebellum development
negative regulation of cell growth
negative regulation of B cell proliferation
regulation of protein stability
protein destabilization
negative regulation of NF-kappaB transcription factor activity
negative regulation of protein binding
negative regulation of immature T cell proliferation in thymus
positive regulation of protein sumoylation
negative regulation of mammary gland epithelial cell proliferation
positive regulation of smooth muscle cell apoptotic process
somatic stem cell population maintenance
senescence-associated heterochromatin focus assembly
negative regulation of phosphorylation
response to drug
glucose homeostasis
positive regulation of apoptotic process
positive regulation of DNA damage response, signal transduction by p53 class mediator
negative regulation of cyclin-dependent protein serine/threonine kinase activity
negative regulation of cell cycle
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
regulation of nucleocytoplasmic transport
regulation of protein export from nucleus
somatic stem cell division
protein stabilization
positive regulation of sequence-specific DNA binding transcription factor activity
negative regulation of ubiquitin-protein transferase activity
positive regulation of apoptotic process involved in mammary gland involution
cellular response to hydrogen peroxide
protein K63-linked ubiquitination
positive regulation of cell cycle arrest
cellular senescence
replicative senescence
positive regulation of protein localization to nucleus
positive regulation of signal transduction by p53 class mediator
regulation of apoptotic DNA fragmentation
negative regulation of proteolysis involved in cellular protein catabolic process
negative regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process
positive regulation of macrophage apoptotic process
positive regulation of cellular senescence

Function(s)

p53 binding
DNA binding
transcription factor activity, sequence-specific DNA binding
cyclin-dependent protein serine/threonine kinase inhibitor activity
transcription factor binding
protein kinase binding
poly(A) RNA binding
NF-kappaB binding
ubiquitin-protein transferase inhibitor activity
MDM2/MDM4 family protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P071770	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	680525	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	878020	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	538553	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	954791	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	810968	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	115413	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P071770	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P071770	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P071770	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P395885	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	95542	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10877999	-	-
Affymetrix Rat Gene 1.0 ST Array	10878000	-	-
Affymetrix Rat Gene 1.0 ST Array	10877998	-	-
Affymetrix Rat Gene 1.1 ST Array	10877997	-	-
Rat Genome 230 2.0 Array	1369194_PM_a_at	-	-
Rat Genome 230 2.0 Array	1369194_a_at	-	-
Affymetrix HT Rat Focus Array	1369194_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1369194_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR0500022763.rn.1	TC0500003113.rn.1	RTA TC
Rat Expression Set 230	1369194_a_at	-	-
Rat Expression Set 230	1369194_PM_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10877997	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21089952	-	-