Rn00581785_m1 Best Coverage

• Gene Symbol: Homer1
• Gene Name: homer homolog 1 (Drosophila)
• Gene Aliases: HOMER1F, Vesl-1
• Chromosome Location: Chr.2: 22909554 - 23012303 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Homer1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031707.1	NP_113895.1	7 - 8	1011		83
	XM_006231775.2	XP_006231837.1	6 - 7	1556		83
	XM_008760635.1	XP_008758857.1	7 - 8	1579		83
GenBank mRNA	AB007688.1	-	7 - 8	1018		83
	AB017140.1	-	7 - 8	1011		83
	AF093267.1	-	6 - 7	1420		83
	AF093268.1	-	7 - 8	1448		83
	AJ276328.1	-	7 - 8	731		83
	AY189942.1	-	2 - 3	354		83
	AY189943.1	-	3 - 4	390		83

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0200000158.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Homer1

Gene Ontology Categories:

Process(es)

skeletal muscle contraction
G-protein coupled glutamate receptor signaling pathway
circadian rhythm
response to nicotine
protein localization to synapse
response to cocaine
behavioral response to cocaine
skeletal muscle fiber development
chemical homeostasis within a tissue
response to calcium ion
positive regulation of calcium ion transport
regulation of calcium ion import
regulation of store-operated calcium entry
regulation of cation channel activity

Function(s)

receptor binding
protein binding
type 5 metabotropic glutamate receptor binding
protein complex scaffold
G-protein coupled glutamate receptor binding
identical protein binding
ion channel binding
protein heterodimerization activity
scaffold protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P764228	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	918530	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	889678	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	902728	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	497918	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	882480	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	583486	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	502999	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	252921	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	780339	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	661803	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	945770	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	751147	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	540626	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	292803	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	182027	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	444889	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	29693	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	136774	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	38765	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P764228	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P764228	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P764228	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P148865	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P380835	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	702394036	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	701030467	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	71177	-	-
Agilent Rat cDNA Microarray (G4105A)	701030467	-	-
Agilent Rat cDNA Microarray (G4105A)	702394036	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10940541	-	-
Affymetrix Rat Gene 1.1 ST Array	10940541	-	-
Rat Genome 230 2.0 Array	1368319_PM_a_at	-	-
Rat Genome 230 2.0 Array	1399163_a_at	-	-
Rat Genome 230 2.0 Array	1370454_PM_at	-	-
Rat Genome 230 2.0 Array	1370997_at	-	-
Rat Genome 230 2.0 Array	1370997_PM_at	-	-
Rat Genome 230 2.0 Array	1370656_PM_a_at	-	-
Rat Genome 230 2.0 Array	1399163_PM_a_at	-	-
Rat Genome 230 2.0 Array	1370656_a_at	-	-
Rat Genome 230 2.0 Array	1368318_PM_at	-	-
Rat Genome 230 2.0 Array	1368318_at	-	-
Rat Genome 230 2.0 Array	1370454_at	-	-
Rat Genome 230 2.0 Array	1368319_a_at	-	-
Affymetrix HT Rat Focus Array	1368319_a_at	-	-
Affymetrix HT Rat Focus Array	1368318_PM_at	-	-
Affymetrix HT Rat Focus Array	1399163_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1368319_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1370997_at	-	-
Affymetrix HT Rat Focus Array	1370656_a_at	-	-
Affymetrix HT Rat Focus Array	1370454_at	-	-
Affymetrix HT Rat Focus Array	1399163_a_at	-	-
Affymetrix HT Rat Focus Array	1368318_at	-	-
Affymetrix HT Rat Focus Array	1370454_PM_at	-	-
Affymetrix HT Rat Focus Array	1370997_PM_at	-	-
Affymetrix HT Rat Focus Array	1370656_PM_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR0200000818.rn.1	TC0200000158.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0200000816.rn.1	TC0200000158.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0200000817.rn.1	TC0200000158.rn.1	RTA TC
Rat Expression Set 230	1370454_PM_at	-	-
Rat Expression Set 230	1368319_PM_a_at	-	-
Rat Expression Set 230	1368318_at	-	-
Rat Expression Set 230	1370656_a_at	-	-
Rat Expression Set 230	1370997_PM_at	-	-
Rat Expression Set 230	1370656_PM_a_at	-	-
Rat Expression Set 230	1399163_a_at	-	-
Rat Expression Set 230	1370997_at	-	-
Rat Expression Set 230	1368318_PM_at	-	-
Rat Expression Set 230	1368319_a_at	-	-
Rat Expression Set 230	1399163_PM_a_at	-	-
Rat Expression Set 230	1370454_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10940541	-	-
Rat Genome U34 Set	AF093267_s_at	-	-
Rat Genome U34 Set	AB017140_at	-	-
Rat Genome U34 Set	rc_AA799735_g_at	-	-
Rat Genome U34 Set	AF093268_s_at	-	-
Rat Genome U34 Set	AB007688_s_at	-	-
Rat Genome U34 Set	AB017140_g_at	-	-
Rat Genome U34 Set	AB003726_at	-	-
Rat Genome U34 Set	AF030088UTR#1_at	-	-
Rat Genome U34 Set	rc_AA925598_at	-	-
Rat Genome U34 Set	AF030088UTR#1_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21726000	-	-