Rn00582195_m1 Best Coverage

• Gene Symbol: Cdkn1b
• Gene Name: cyclin-dependent kinase inhibitor 1B
• Gene Aliases: CDKN4, Cdki1b, Kip1, P27KIP1, p27
• Chromosome Location: Chr.4: 168689046 - 168694159 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cdkn1b
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031762.3	NP_113950.2	3 - 4	680		93
	XM_006237539.2	XP_006237601.1	2 - 3	1133		93
GenBank mRNA	AY623024.1	-	2 - 3	1026		93
	AY623040.1	-	3 - 4	680		93
	D83792.1	-	2 - 3	966		93

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0400001929.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Endogenous Controls, Recommended Assay, Rattus norvegicus, Rat Endogenous Controls, 1700, Inventoried, Rat_Endogenous_Controls, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cdkn1b

Panther Classification:

Molecular Function -

kinase inhibitor

Gene Ontology Categories:

Process(es)

G1/S transition of mitotic cell cycle
response to hypoxia
potassium ion transport
activation of cysteine-type endopeptidase activity involved in apoptotic process
cell cycle arrest
sensory perception of sound
cell death
positive regulation of cell proliferation
negative regulation of cell proliferation
response to glucose
positive regulation of cell death
response to organic cyclic compound
phosphorylation
negative regulation of cell growth
positive regulation of microtubule polymerization
response to estradiol
negative regulation of kinase activity
negative regulation of phosphorylation
response to drug
negative regulation of apoptotic process
response to amino acid
response to peptide hormone
positive regulation of protein catabolic process
negative regulation of cyclin-dependent protein serine/threonine kinase activity
negative regulation of transcription, DNA-templated
negative regulation of mitotic cell cycle
response to cadmium ion
autophagic cell death
inner ear development
negative regulation of epithelial cell proliferation
negative regulation of cellular component movement
negative regulation of epithelial cell proliferation involved in prostate gland development
cellular response to antibiotic
cellular response to lithium ion
cellular response to organic cyclic compound
mitotic cell cycle arrest

Function(s)

cyclin-dependent protein serine/threonine kinase inhibitor activity
protein binding
cysteine-type endopeptidase activator activity involved in apoptotic process
kinase activity
protein phosphatase binding
Hsp70 protein binding
protein complex binding
chaperone binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P11268	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	836619	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	838115	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	47999	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	167991	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P11268	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P11268	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P11268	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P508264	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P11268	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	73911	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10859258	-	-
Affymetrix Rat Gene 1.0 ST Array	10859257	-	-
Affymetrix Rat Gene 1.0 ST Array	10859255	-	-
Affymetrix Rat Gene 1.0 ST Array	10859259	-	-
Affymetrix Rat Gene 1.0 ST Array	10859256	-	-
Affymetrix Rat Gene 1.0 ST Array	10859260	-	-
Affymetrix Rat Gene 1.1 ST Array	10859254	-	-
Rat Genome 230 2.0 Array	1369192_PM_at	-	-
Rat Genome 230 2.0 Array	1373812_PM_at	-	-
Rat Genome 230 2.0 Array	1369192_at	-	-
Rat Genome 230 2.0 Array	1373812_at	-	-
Affymetrix HT Rat Focus Array	1369192_PM_at	-	-
Affymetrix HT Rat Focus Array	1369192_at	-	-
Affymetrix HT Rat Focus Array	1373812_at	-	-
Affymetrix HT Rat Focus Array	1373812_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0400013925.rn.1	TC0400001929.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400013928.rn.1	TC0400001929.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400013927.rn.1	TC0400001929.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400013923.rn.1	TC0400001929.rn.1	RTA TC
Rat Expression Set 230	1369192_at	-	-
Rat Expression Set 230	1373812_at	-	-
Rat Expression Set 230	1369192_PM_at	-	-
Rat Expression Set 230	1373812_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10859254	-	-
Rat Genome U34 Set	D83792_at	-	-
Rat Genome U34 Set	AA944043_at	-	-
Rat Genome U34 Set	D83792_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22353027	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1362533	-	-
RatRef-12 Expression BeadChip	ILMN_48843	-	-