Rn00583117_m1 Best Coverage

• Gene Symbol: Trpv1
• Gene Name: transient receptor potential cation channel, subfamily V, member 1
• Gene Aliases: TRPV1_SON, VR.5'sv, Vr1, Vr1l1
• Chromosome Location: Chr.10: 59799123 - 59824677 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Trpv1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031982.1	NP_114188.1	15 - 16	2422		66
	XM_008767882.1	XP_008766104.1	14 - 15	2429		66
GenBank mRNA	AB040873.1	-	14 - 15	2342		66
	AB041029.1	-	13 - 14	2162		66
	AF029310.1	-	15 - 16	2422		66
	AF158248.2	-	9 - 10	1755		66
	LC008303.1	-	10 - 11	1662		66

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000001025.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Ion Channel, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Trpv1

Panther Classification:

Molecular Function -

ion channel

Gene Ontology Categories:

Process(es)

temperature homeostasis
fever generation
microglial cell activation
diet induced thermogenesis
peptide secretion
lipid metabolic process
calcium ion transport
inflammatory response
signal transduction
positive regulation of cytosolic calcium ion concentration
response to pH
response to heat
response to organonitrogen compound
glutamate secretion
urinary bladder smooth muscle contraction
sensory perception of pain
ion transmembrane transport
positive regulation of apoptotic process
response to peptide hormone
positive regulation of nitric oxide biosynthetic process
response to pain
behavioral response to pain
sensory perception of mechanical stimulus
thermoception
detection of chemical stimulus involved in sensory perception of pain
smooth muscle contraction involved in micturition
positive regulation of gastric acid secretion
calcium ion transmembrane transport
cellular response to alkaloid
cellular response to ATP
cellular response to cytokine stimulus
cellular response to tumor necrosis factor
cellular response to growth factor stimulus
cellular response to temperature stimulus
negative regulation of establishment of blood-brain barrier
cellular response to nerve growth factor stimulus

Function(s)

transmembrane signaling receptor activity
ion channel activity
excitatory extracellular ligand-gated ion channel activity
cation channel activity
calcium channel activity
protein binding
calmodulin binding
ATP binding
cation transmembrane transporter activity
ligand-gated ion channel activity
calcium-release channel activity
chloride channel regulator activity
identical protein binding
phosphoprotein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P130201	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P061740	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	508427	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	453420	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	409995	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	669930	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	185007	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	972817	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	601542	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	417727	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	250826	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	870272	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	459604	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	593292	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	51761	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	69092	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	59630	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	703014	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	210063	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	440085	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	406156	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	722407	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	122875	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	61400	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	140668	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P130201	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P061740	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P130201	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P061740	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P130201	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P061740	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P12709	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	701821845	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	51631	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	52817	-	-
Agilent Rat cDNA Microarray (G4105A)	701821845	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10735682	-	-
Affymetrix Rat Gene 1.0 ST Array	10735687	-	-
Affymetrix Rat Gene 1.0 ST Array	10735680	-	-
Affymetrix Rat Gene 1.0 ST Array	10735691	-	-
Affymetrix Rat Gene 1.0 ST Array	10735697	-	-
Affymetrix Rat Gene 1.0 ST Array	10759110	-	-
Affymetrix Rat Gene 1.0 ST Array	10735696	-	-
Affymetrix Rat Gene 1.0 ST Array	10735694	-	-
Affymetrix Rat Gene 1.0 ST Array	10735688	-	-
Affymetrix Rat Gene 1.0 ST Array	10735686	-	-
Affymetrix Rat Gene 1.0 ST Array	10735695	-	-
Affymetrix Rat Gene 1.0 ST Array	10735684	-	-
Affymetrix Rat Gene 1.0 ST Array	10759111	-	-
Affymetrix Rat Gene 1.0 ST Array	10735690	-	-
Affymetrix Rat Gene 1.0 ST Array	10735681	-	-
Affymetrix Rat Gene 1.0 ST Array	10735679	-	-
Affymetrix Rat Gene 1.0 ST Array	10735698	-	-
Affymetrix Rat Gene 1.0 ST Array	10735692	-	-
Affymetrix Rat Gene 1.0 ST Array	10735678	-	-
Affymetrix Rat Gene 1.0 ST Array	10735685	-	-
Affymetrix Rat Gene 1.0 ST Array	10735693	-	-
Affymetrix Rat Gene 1.0 ST Array	10735683	-	-
Affymetrix Rat Gene 1.0 ST Array	10759112	-	-
Affymetrix Rat Gene 1.0 ST Array	10735689	-	-
Affymetrix Rat Gene 1.1 ST Array	10759096	-	-
Affymetrix Rat Gene 1.1 ST Array	10735677	-	-
Rat Genome 230 2.0 Array	1369370_PM_s_at	-	-
Rat Genome 230 2.0 Array	1370685_PM_at	-	-
Rat Genome 230 2.0 Array	1368313_PM_a_at	-	-
Rat Genome 230 2.0 Array	1370675_PM_at	-	-
Rat Genome 230 2.0 Array	1369370_s_at	-	-
Rat Genome 230 2.0 Array	1370675_at	-	-
Rat Genome 230 2.0 Array	1368313_a_at	-	-
Rat Genome 230 2.0 Array	1370685_at	-	-
Affymetrix HT Rat Focus Array	1370675_at	-	-
Affymetrix HT Rat Focus Array	1368313_a_at	-	-
Affymetrix HT Rat Focus Array	1370685_PM_at	-	-
Affymetrix HT Rat Focus Array	1370685_at	-	-
Affymetrix HT Rat Focus Array	1370675_PM_at	-	-
Affymetrix HT Rat Focus Array	1368313_PM_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000009387.rn.1	TC1000001025.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000009385.rn.1	TC1000001025.rn.1	RTA TC
Rat Expression Set 230	1369370_s_at	-	-
Rat Expression Set 230	1369370_PM_s_at	-	-
Rat Expression Set 230	1370685_at	-	-
Rat Expression Set 230	1370675_PM_at	-	-
Rat Expression Set 230	1370685_PM_at	-	-
Rat Expression Set 230	1368313_a_at	-	-
Rat Expression Set 230	1368313_PM_a_at	-	-
Rat Expression Set 230	1370675_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10735677	-	-
Affymetrix Rat Gene 1.0 ST Array	10759096	-	-
Rat Genome U34 Set	AF029310_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21426000	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1356230	-	-
RatRef-12 Expression BeadChip	ILMN_65825	-	-