Rn00583160_m1 Best Coverage

• Gene Symbol: Sdcbp
• Gene Name: syndecan binding protein
• Gene Aliases: TACIP18, mda-9
• Chromosome Location: Chr.5: 19471664 - 19498499 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sdcbp
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031986.1	NP_114192.1	3 - 4	210		120
GenBank mRNA	AF248548.1	-	3 - 4	210		120
	AJ292243.1	-	2 - 3	153		120
	BC064651.1	-	3 - 4	178	5598152	120

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500000154.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sdcbp

Panther Classification:

Molecular Function -

membrane trafficking regulatory protein

Gene Ontology Categories:

Process(es)

Ras protein signal transduction
positive regulation of phosphorylation
positive regulation of exosomal secretion
positive regulation of extracellular exosome assembly

Function(s)

glycoprotein binding
frizzled binding
interleukin-5 receptor binding
protein binding
protein C-terminus binding
growth factor binding
neurexin family protein binding
identical protein binding
protein homodimerization activity
syndecan binding
ephrin receptor binding
protein heterodimerization activity
protein N-terminus binding
cell adhesion molecule binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P13971	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	3107	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	50418	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	414112	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	535967	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	92461	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	935888	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	621840	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	920495	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	501760	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	85576	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	131241	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	833625	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	221862	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	159562	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	873771	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	174303	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	492250	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	658458	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	41887	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	533478	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	55478	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	7100	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	165260	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P13971	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P13971	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P13971	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P13971	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700182159	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	33823	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	45766	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	54850	-	-
Agilent Rat cDNA Microarray (G4105A)	700182159	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10867522	-	-
Affymetrix Rat Gene 1.0 ST Array	10867524	-	-
Affymetrix Rat Gene 1.0 ST Array	10867525	-	-
Affymetrix Rat Gene 1.0 ST Array	10867521	-	-
Affymetrix Rat Gene 1.0 ST Array	10867517	-	-
Affymetrix Rat Gene 1.0 ST Array	10867519	-	-
Affymetrix Rat Gene 1.0 ST Array	10867520	-	-
Affymetrix Rat Gene 1.0 ST Array	10867518	-	-
Affymetrix Rat Gene 1.0 ST Array	10867523	-	-
Affymetrix Rat Gene 1.1 ST Array	10867516	-	-
Rat Genome 230 2.0 Array	1398762_PM_at	-	-
Rat Genome 230 2.0 Array	1398762_at	-	-
Affymetrix HT Rat Focus Array	1398762_PM_at	-	-
Affymetrix HT Rat Focus Array	1398762_at	-	-
Affymetrix Rat Clariom S Assay	PSR0500001014.rn.1	TC0500000154.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500001015.rn.1	TC0500000154.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500001007.rn.1	TC0500000154.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500001013.rn.1	TC0500000154.rn.1	RTA TC
Rat Expression Set 230	1398762_at	-	-
Rat Expression Set 230	1398762_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10867516	-	-
Rat Genome U34 Set	rc_AA892373_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21151722	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1372999	-	-
RatRef-12 Expression BeadChip	ILMN_49378	-	-