Rn00584298_m1 Best Coverage

• Gene Symbol: Nr5a1
• Gene Name: nuclear receptor subfamily 5, group A, member 1
• Gene Aliases: Ad4BP/SF-1, Ad4bp, Ftzf1, Sf-1
• Chromosome Location: Chr.3: 22998900 - 23020441 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Nr5a1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001191099.1	NP_001178028.1	4 - 5	1023		65
	XM_006234106.2	XP_006234168.1	2 - 3	2034		65

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300003010.rn.1

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Gene Ontology Categories:

Process(es)

luteinization
regulation of transcription, DNA-templated
regulation of transcription by RNA polymerase II
transcription by RNA polymerase II
male gonad development
female gonad development
tissue development
multicellular organism aging
reproductive process
cell differentiation
adrenal gland development
intracellular receptor signaling pathway
hormone metabolic process
steroid hormone mediated signaling pathway
positive regulation of transcription, DNA-templated
positive regulation of transcription by RNA polymerase II
maintenance of protein location in nucleus
positive regulation of male gonad development
negative regulation of female gonad development

Function(s)

DNA-binding transcription factor activity, RNA polymerase II-specific
DNA binding
chromatin binding
double-stranded DNA binding
DNA-binding transcription factor activity
steroid hormone receptor activity
nuclear receptor activity
phospholipid binding
zinc ion binding
enzyme binding
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P009788	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P009788	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P009788	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P15478	-	-

Array Name	Probe IDs	Targets	Target Type
Rat Genome 230 2.0 Array	1369859_PM_at	-	-
Rat Genome 230 2.0 Array	1393286_PM_at	-	-
Rat Genome 230 2.0 Array	1393286_at	-	-
Rat Genome 230 2.0 Array	1369859_at	-	-
Affymetrix HT Rat Focus Array	1369859_at	-	-
Affymetrix HT Rat Focus Array	1369859_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0300023340.rn.1	TC0300003010.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300023339.rn.1	TC0300003010.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300023338.rn.1	TC0300003010.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0300023341.rn.1	TC0300003010.rn.1	RTA TC
Rat Expression Set 230	1369859_PM_at	-	-
Rat Expression Set 230	1369859_at	-	-
Rat Expression Set 230	1393286_at	-	-
Rat Expression Set 230	1393286_PM_at	-	-
Rat Genome U34 Set	D42156cds_at	-	-
Rat Genome U34 Set	rc_AA850212_at	-	-
Rat Genome U34 Set	D42156cds_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21285620	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1649975	-	-