Rn00584362_m1 Best Coverage

• Gene Symbol: Cd40lg
• Gene Name: CD40 ligand
• Gene Aliases: Cd40l, Tnfsf5
• Chromosome Location: Chr.X: 159703703 - 159714886 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cd40lg
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053353.1	NP_445805.1	4 - 5	407		116
GenBank mRNA	AF013985.1	-	4 - 5	407		116
	AF116582.1	-	4 - 5	407		116
	EF066490.1	-	4 - 5	407		116

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0X00001360.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, 3' Most, Recommended Assay, Rattus norvegicus, Rat Inflammation, 1700, Inventoried, Rat_Inflammation, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cd40lg

Gene Ontology Categories:

Process(es)

positive regulation of immune response to tumor cell
inflammatory response
immune response
platelet activation
B cell differentiation
positive regulation of B cell proliferation
positive regulation of interferon-gamma production
positive regulation of interleukin-10 production
positive regulation of interleukin-12 production
B cell proliferation
negative regulation of apoptotic process
isotype switching
positive regulation of MHC class II biosynthetic process
immunoglobulin secretion
regulation of immunoglobulin secretion
dendritic cell differentiation
positive regulation of endothelial cell apoptotic process

Function(s)

molecular_function
cytokine activity
tumor necrosis factor receptor binding
CD40 receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P128867	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	493943	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	962600	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	465774	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	112994	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	622097	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	278374	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	122912	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	899428	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	585941	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	506977	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	9880	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	54112	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P128867	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P128867	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P128867	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P12781	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	9758	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10935610	-	-
Affymetrix Rat Gene 1.0 ST Array	10935607	-	-
Affymetrix Rat Gene 1.0 ST Array	10935608	-	-
Affymetrix Rat Gene 1.0 ST Array	10935609	-	-
Affymetrix Rat Gene 1.0 ST Array	10935606	-	-
Affymetrix Rat Gene 1.1 ST Array	10935605	-	-
Rat Genome 230 2.0 Array	1368800_at	-	-
Rat Genome 230 2.0 Array	1368800_PM_at	-	-
Affymetrix HT Rat Focus Array	1368800_PM_at	-	-
Affymetrix HT Rat Focus Array	1368800_at	-	-
Affymetrix Rat Clariom S Assay	PSR0X00008495.rn.1	TC0X00001360.rn.1	RTA TC
Rat Expression Set 230	1368800_at	-	-
Rat Expression Set 230	1368800_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10935605	-	-
Rat Genome U34 Set	AF013985_at	-	-
Rat Genome U34 Set	AF013985_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21447049	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1369246	-	-
RatRef-12 Expression BeadChip	ILMN_51319	-	-