Rn00585211_m1 Best Coverage

• Gene Symbol: Cnga3
• Gene Name: cyclic nucleotide gated channel alpha 3
• Gene Aliases: -
• Chromosome Location: Chr.9: 43807440 - 43855878 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Cnga3
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053495.1	NP_445947.1	4 - 5	451		59
	XM_008767042.1	XP_008765264.1	6 - 7	975		59
	XM_008767043.1	XP_008765265.1	5 - 6	861		59
	XM_008767044.1	XP_008765266.1	5 - 6	858		59
GenBank mRNA	AB002801.1	-	4 - 5	451		59
	AJ272428.1	-	6 - 7	738		59
	AJ272429.1	-	5 - 6	624		59

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0900000489.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Ion Channel, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cnga3

Panther Classification:

Molecular Function -

ligand-gated ion channel

Gene Ontology Categories:

Process(es)

cation transport
phototransduction, visible light
response to corticosteroid
response to magnesium ion
ion transmembrane transport
regulation of membrane potential
retinal cone cell development
response to cAMP
potassium ion transmembrane transport
cation transmembrane transport

Function(s)

signal transducer activity
intracellular cyclic nucleotide activated cation channel activity
intracellular cAMP activated cation channel activity
intracellular cGMP activated cation channel activity
voltage-gated potassium channel activity
protein C-terminus binding
cGMP binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P005812	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P157584	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	213983	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	672428	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	345116	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	357069	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	538959	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	730013	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	86303	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	648983	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	71939	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	536653	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	533043	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	866441	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	145111	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	453462	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	809556	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	208061	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	735755	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	964527	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	375765	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	167232	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	48990	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	600932	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	527884	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	13247	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	178425	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	12541	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	86198	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	131709	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P157584	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P005812	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P005812	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P157584	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P157584	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P005812	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P540888	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	56382	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	70685	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	71558	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	14875	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10922649	-	-
Affymetrix Rat Gene 1.0 ST Array	10922638	-	-
Affymetrix Rat Gene 1.0 ST Array	10922648	-	-
Affymetrix Rat Gene 1.0 ST Array	10922639	-	-
Affymetrix Rat Gene 1.0 ST Array	10922646	-	-
Affymetrix Rat Gene 1.0 ST Array	10922637	-	-
Affymetrix Rat Gene 1.0 ST Array	10922647	-	-
Affymetrix Rat Gene 1.0 ST Array	10922643	-	-
Affymetrix Rat Gene 1.0 ST Array	10922641	-	-
Affymetrix Rat Gene 1.0 ST Array	10922645	-	-
Affymetrix Rat Gene 1.0 ST Array	10922644	-	-
Affymetrix Rat Gene 1.1 ST Array	10922636	-	-
Rat Genome 230 2.0 Array	1387496_PM_a_at	-	-
Rat Genome 230 2.0 Array	1387496_a_at	-	-
Affymetrix HT Rat Focus Array	1387496_a_at	-	-
Affymetrix HT Rat Focus Array	1387496_PM_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR0900003930.rn.1	TC0900000489.rn.1	RTA TC
Rat Expression Set 230	1387496_PM_a_at	-	-
Rat Expression Set 230	1387496_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10922636	-	-
Rat Genome U34 Set	AB002801_at	-	-
Rat Genome U34 Set	AF031943_s_at	-	-
Rat Genome U34 Set	AB002801_at	-	-
Rat Genome U34 Set	AF031943_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21587508	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1358426	-	-
RatRef-12 Expression BeadChip	ILMN_50241	-	-