Rn00585371_m1 Best Coverage

• Gene Symbol: Herpud1
• Gene Name: homocysteine-inducible, endoplasmic reticulum stress-inducible, ubiquitin-like domain member 1
• Gene Aliases: Sup
• Chromosome Location: Chr.19: 11046903 - 11057570 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Herpud1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053523.1	NP_445975.1	1 - 2	237		76
	XM_006255133.2	XP_006255195.1	1 - 2	553		76
GenBank mRNA	AB033771.1	-	1 - 2	237		76
	BC061849.1	-	1 - 2	259		76

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1900001004.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Herpud1

Gene Ontology Categories:

Process(es)

ubiquitin-dependent protein catabolic process
cellular calcium ion homeostasis
response to unfolded protein
endoplasmic reticulum unfolded protein response
regulation of protein ubiquitination
positive regulation of protein binding
endoplasmic reticulum calcium ion homeostasis
response to endoplasmic reticulum stress
negative regulation of cysteine-type endopeptidase activity involved in apoptotic process
negative regulation of endoplasmic reticulum stress-induced intrinsic apoptotic signaling pathway
positive regulation of ER-associated ubiquitin-dependent protein catabolic process
negative regulation of intrinsic apoptotic signaling pathway

Function(s)

transmembrane transporter binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P1047924	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	71560	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	37483	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	952996	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	881852	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	368891	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	270476	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	497422	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	116905	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P1047924	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P1047924	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P1047924	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P137356	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P1047924	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700527675	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	59667	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	29758	-	-
Agilent Rat cDNA Microarray (G4105A)	700527675	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10809331	-	-
Affymetrix Rat Gene 1.0 ST Array	10809329	-	-
Affymetrix Rat Gene 1.0 ST Array	10809330	-	-
Affymetrix Rat Gene 1.0 ST Array	10809332	-	-
Affymetrix Rat Gene 1.0 ST Array	10809336	-	-
Affymetrix Rat Gene 1.0 ST Array	10809334	-	-
Affymetrix Rat Gene 1.0 ST Array	10809333	-	-
Affymetrix Rat Gene 1.0 ST Array	10809335	-	-
Affymetrix Rat Gene 1.1 ST Array	10809328	-	-
Rat Genome 230 2.0 Array	1367741_at	-	-
Rat Genome 230 2.0 Array	1367741_PM_at	-	-
Affymetrix HT Rat Focus Array	1367741_at	-	-
Affymetrix HT Rat Focus Array	1367741_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1900008104.rn.1	TC1900001004.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1900008101.rn.1	TC1900001004.rn.1	RTA TC
Rat Expression Set 230	1367741_PM_at	-	-
Rat Expression Set 230	1367741_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10809328	-	-
Rat Genome U34 Set	rc_AA957323_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21193724	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1370868	-	-
RatRef-12 Expression BeadChip	ILMN_51127	-	-