Rn00586187_m1 Best Coverage

• Gene Symbol: Pitx1
• Gene Name: paired-like homeodomain 1
• Gene Aliases: Bft
• Chromosome Location: Chr.17: 8873184 - 8884428 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pitx1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053624.2	NP_446076.1	1 - 2	457		90
	XM_006253569.2	XP_006253631.1	2 - 3	275		90
GenBank mRNA	AB047298.1	-	1 - 2	478		90
	BC061966.1	-	1 - 2	457	5621094	90

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1700000133.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pitx1

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Process(es)

skeletal system development
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
branchiomeric skeletal muscle development
pituitary gland development
embryonic hindlimb morphogenesis
hindlimb morphogenesis
positive regulation of transcription from RNA polymerase II promoter
myoblast fate commitment
cartilage development

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II transcription factor binding
transcription factor activity, sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P15339	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	644784	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	552227	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	123421	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P15339	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P15339	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P15339	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P15339	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10793984	-	-
Affymetrix Rat Gene 1.0 ST Array	10793982	-	-
Affymetrix Rat Gene 1.0 ST Array	10793983	-	-
Affymetrix Rat Gene 1.0 ST Array	10793985	-	-
Affymetrix Rat Gene 1.1 ST Array	10793981	-	-
Rat Genome 230 2.0 Array	1369288_PM_at	-	-
Rat Genome 230 2.0 Array	1369288_at	-	-
Affymetrix HT Rat Focus Array	1369288_at	-	-
Affymetrix HT Rat Focus Array	1369288_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1700001041.rn.1	TC1700000133.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001045.rn.1	TC1700000133.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001042.rn.1	TC1700000133.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001039.rn.1	TC1700000133.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001040.rn.1	TC1700000133.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1700001043.rn.1	TC1700000133.rn.1	RTA TC
Rat Expression Set 230	1369288_PM_at	-	-
Rat Expression Set 230	1369288_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10793981	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21459147	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1359363	-	-
RatRef-12 Expression BeadChip	ILMN_52685	-	-