Rn00586302_m1 Best Coverage

• Gene Symbol: Sc5d
• Gene Name: sterol-C5-desaturase
• Gene Aliases: Sc5dl
• Chromosome Location: Chr.8: 46528066 - 46537014 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sc5d
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053642.2	NP_446094.1	4 - 5	469		118
GenBank mRNA	AB052846.1	-	3 - 4	447		118
	BC081704.1	-	4 - 5	469	7131154	118

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0800002361.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sc5d

Panther Classification:

Molecular Function -

oxidase

Gene Ontology Categories:

Process(es)

fatty acid metabolic process
fatty acid biosynthetic process
cholesterol biosynthetic process via lathosterol
oxidation-reduction process

Function(s)

C-5 sterol desaturase activity
iron ion binding
lathosterol oxidase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P356027	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	542113	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	941410	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	214288	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	626292	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	85358	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	397182	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	501327	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	679513	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	57155	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P356027	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P356027	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P356027	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P356027	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	28640	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	2190	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10916541	-	-
Affymetrix Rat Gene 1.0 ST Array	10916538	-	-
Affymetrix Rat Gene 1.0 ST Array	10916535	-	-
Affymetrix Rat Gene 1.0 ST Array	10916539	-	-
Affymetrix Rat Gene 1.0 ST Array	10916536	-	-
Affymetrix Rat Gene 1.0 ST Array	10916540	-	-
Affymetrix Rat Gene 1.0 ST Array	10916537	-	-
Affymetrix Rat Gene 1.1 ST Array	10916534	-	-
Rat Genome 230 2.0 Array	1387926_PM_at	-	-
Rat Genome 230 2.0 Array	1387926_at	-	-
Rat Genome 230 2.0 Array	1390777_at	-	-
Rat Genome 230 2.0 Array	1390777_PM_at	-	-
Affymetrix HT Rat Focus Array	1387926_PM_at	-	-
Affymetrix HT Rat Focus Array	1390777_PM_at	-	-
Affymetrix HT Rat Focus Array	1387926_at	-	-
Affymetrix HT Rat Focus Array	1390777_at	-	-
Affymetrix Rat Clariom S Assay	PSR0800018770.rn.1	TC0800002361.rn.1	RTA TC
Rat Expression Set 230	1387926_PM_at	-	-
Rat Expression Set 230	1387926_at	-	-
Rat Expression Set 230	1390777_at	-	-
Rat Expression Set 230	1390777_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10916534	-	-
Rat Genome U34 Set	rc_AI011655_at	-	-
Rat Genome U34 Set	rc_AI043855_at	-	-
Rat Genome U34 Set	rc_AA859330_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21883231	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1363277	-	-
RatRef-12 Expression BeadChip	ILMN_56545	-	-