Rn00586787_m1 Best Coverage

• Gene Symbol: Hdgf
• Gene Name: hepatoma-derived growth factor
• Gene Aliases: -
• Chromosome Location: Chr.2: 187275120 - 187284310 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hdgf
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053707.2	NP_446159.1	3 - 4	577		82
GenBank mRNA	AF389348.1	-	3 - 4	306		82
	AF448810.1	-	3 - 4	306		82
	BC070943.1	-	3 - 4	577	7103046	82
	FQ231256.1	-	4 - 5	340		82

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0200001519.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hdgf

Panther Classification:

Molecular Function -

transcription cofactor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
cellular process
protein localization to nucleus
positive regulation of transcription from RNA polymerase II promoter

Function(s)

nucleotide binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription corepressor activity
transcription corepressor binding
growth factor activity
heparin binding
poly(A) RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P336429	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P009375	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	578949	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	541324	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	942423	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	577018	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	371609	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	754094	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	46084	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P336429	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P009375	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P009375	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P336429	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P009375	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P336429	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P336429	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	103006	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10816392	-	-
Affymetrix Rat Gene 1.0 ST Array	10816389	-	-
Affymetrix Rat Gene 1.0 ST Array	10816388	-	-
Affymetrix Rat Gene 1.0 ST Array	10816390	-	-
Affymetrix Rat Gene 1.0 ST Array	10816391	-	-
Affymetrix Rat Gene 1.0 ST Array	10816393	-	-
Affymetrix Rat Gene 1.1 ST Array	10816387	-	-
Rat Genome 230 2.0 Array	1367817_PM_at	-	-
Rat Genome 230 2.0 Array	1367817_at	-	-
Affymetrix HT Rat Focus Array	1367817_at	-	-
Affymetrix HT Rat Focus Array	1367817_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0200009402.rn.1	TC0200001519.rn.1	RTA TC
Rat Expression Set 230	1367817_at	-	-
Rat Expression Set 230	1367817_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10816387	-	-
Rat Genome U34 Set	rc_AI170366_at	-	-
Rat Genome U34 Set	rc_AI180266_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21641475	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1358138	-	-
RatRef-12 Expression BeadChip	ILMN_66360	-	-