Rn00586960_m1 Best Coverage

• Gene Symbol: Casp4
• Gene Name: caspase 4, apoptosis-related cysteine peptidase
• Gene Aliases: Casp11
• Chromosome Location: Chr.8: 2616391 - 2651682 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Casp4
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053736.2	NP_446188.2	5 - 6	925		96
GenBank mRNA	AY029283.1	-	5 - 6	948		96
	BC104720.1	-	5 - 6	925	7382967	96
	FQ227402.1	-	5 - 6	962		96
	FQ232279.1	-	5 - 6	962		96

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0800000013.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Protease, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Casp4

Panther Classification:

Molecular Function -

protease

Gene Ontology Categories:

Process(es)

proteolysis
apoptotic process
activation of cysteine-type endopeptidase activity involved in apoptotic process
inflammatory response
substantia nigra development
ectopic germ cell programmed cell death
positive regulation of interleukin-1 beta secretion
regulation of inflammatory response
pyroptosis
cellular response to mechanical stimulus
execution phase of apoptosis

Function(s)

cysteine-type endopeptidase activity
protein binding
scaffold protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P1028549	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	914911	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	622528	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	348460	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	539821	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	799470	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	516090	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	896229	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	855513	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	627652	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	686515	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	846949	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	432109	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	915428	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	204807	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	68856	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	74139	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	50688	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	104493	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	144364	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P1028549	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P1028549	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P1028549	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P1028549	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	104741	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	46056	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	15800	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	1953	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	90356	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10907831	-	-
Affymetrix Rat Gene 1.0 ST Array	10907827	-	-
Affymetrix Rat Gene 1.0 ST Array	10907832	-	-
Affymetrix Rat Gene 1.0 ST Array	10907833	-	-
Affymetrix Rat Gene 1.0 ST Array	10907830	-	-
Affymetrix Rat Gene 1.0 ST Array	10907829	-	-
Affymetrix Rat Gene 1.0 ST Array	10907826	-	-
Affymetrix Rat Gene 1.0 ST Array	10907828	-	-
Affymetrix Rat Gene 1.1 ST Array	10907825	-	-
Rat Genome 230 2.0 Array	1387818_at	-	-
Rat Genome 230 2.0 Array	1387818_PM_at	-	-
Affymetrix HT Rat Focus Array	1387818_PM_at	-	-
Affymetrix HT Rat Focus Array	1387818_at	-	-
Affymetrix Rat Clariom S Assay	PSR0800000075.rn.1	TC0800000013.rn.1	RTA TC
Rat Expression Set 230	1387818_at	-	-
Rat Expression Set 230	1387818_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10907825	-	-
Rat Genome U34 Set	rc_AI146119_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20899170	-	-
ABI Rat Genome Survey Microarray	22370065	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1368144	-	-
RatRef-12 Expression BeadChip	ILMN_55458	-	-