Rn00587898_m1 Best Coverage

• Gene Symbol: Phox2a
• Gene Name: paired-like homeobox 2a
• Gene Aliases: Arix
• Chromosome Location: Chr.1: 166893734 - 166898252 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Phox2a
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053869.1	NP_446321.1	1 - 2	412		61
GenBank mRNA	U25967.1	-	1 - 2	412		61

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100002173.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Phox2a

Gene Ontology Categories:

Process(es)

noradrenergic neuron differentiation
transcription, DNA-templated
aging
somatic motor neuron differentiation
oculomotor nerve formation
trochlear nerve formation
locus ceruleus development
midbrain development
regulation of respiratory gaseous exchange
positive regulation of transcription by RNA polymerase II
sympathetic nervous system development
parasympathetic nervous system development

Function(s)

RNA polymerase II transcription regulatory region sequence-specific DNA binding
sequence-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P164453	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	234667	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	557835	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	793671	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P164453	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P164453	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P164453	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P1005583	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10709257	-	-
Affymetrix Rat Gene 1.0 ST Array	10709260	-	-
Affymetrix Rat Gene 1.0 ST Array	10709256	-	-
Affymetrix Rat Gene 1.0 ST Array	10709258	-	-
Affymetrix Rat Gene 1.0 ST Array	10709259	-	-
Affymetrix Rat Gene 1.1 ST Array	10709255	-	-
Rat Genome 230 2.0 Array	1387238_at	-	-
Rat Genome 230 2.0 Array	1387238_PM_at	-	-
Affymetrix HT Rat Focus Array	1387238_PM_at	-	-
Affymetrix HT Rat Focus Array	1387238_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100016883.rn.1	TC0100002173.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100016884.rn.1	TC0100002173.rn.1	RTA TC
Rat Expression Set 230	1387238_at	-	-
Rat Expression Set 230	1387238_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10709255	-	-
Rat Genome U34 Set	U25967_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22118192	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_2039543	-	-
RatRef-12 Expression BeadChip	ILMN_59340	-	-