Rn00589669_m1 Best Coverage

• Gene Symbol: Chek1
• Gene Name: checkpoint kinase 1
• Gene Aliases: -
• Chromosome Location: Chr.8: 39181162 - 39202647 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Chek1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_080400.1	NP_536325.1	7 - 8	762		139
	XM_008766042.1	XP_008764264.1	7 - 8	1895		139
	XM_008766043.1	XP_008764265.1	7 - 8	832		139
GenBank mRNA	AF414135.1	-	7 - 8	762		139
	AF414136.2	-	2 - 3	181		139
	AF443592.1	-	7 - 8	760		139

More Information

Additional Information:

This assay is in the 5'UTR region of the AF414136.2 transcripts.

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Protein Kinase, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Chek1

Panther Classification:

Molecular Function -

glycosyltransferase, non-receptor serine/threonine protein kinase

Gene Ontology Categories:

Process(es)

DNA damage checkpoint
G2/M transition of mitotic cell cycle
DNA repair
protein phosphorylation
cellular response to DNA damage stimulus
DNA damage induced protein phosphorylation
regulation of gene expression
regulation of double-strand break repair via homologous recombination
regulation of transcription from RNA polymerase II promoter in response to UV-induced DNA damage
negative regulation of G2/M transition of mitotic cell cycle
peptidyl-threonine phosphorylation
histone H3-T11 phosphorylation
regulation of cell proliferation
negative regulation of mitotic nuclear division
regulation of mitotic centrosome separation
chromatin-mediated maintenance of transcription
cellular response to mechanical stimulus
cellular response to organic substance
cellular response to caffeine
negative regulation of DNA biosynthetic process
regulation of histone H3-K9 acetylation

Function(s)

protein kinase activity
protein serine/threonine kinase activity
protein binding
ATP binding
histone kinase activity (H3-T11 specific)

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P13069	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	741928	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	777053	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	605834	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	682641	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	500685	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	439111	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	166744	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	390169	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	644002	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	35479	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	47188	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	947354	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	288793	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	463615	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	497726	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	82937	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	136962	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	152748	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P13069	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P13069	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P13069	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P13069	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	54257	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	98555	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	36559	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10916117	-	-
Affymetrix Rat Gene 1.0 ST Array	10916121	-	-
Affymetrix Rat Gene 1.0 ST Array	10916122	-	-
Affymetrix Rat Gene 1.0 ST Array	10916114	-	-
Affymetrix Rat Gene 1.0 ST Array	10916111	-	-
Affymetrix Rat Gene 1.0 ST Array	10916116	-	-
Affymetrix Rat Gene 1.0 ST Array	10916120	-	-
Affymetrix Rat Gene 1.0 ST Array	10916113	-	-
Affymetrix Rat Gene 1.0 ST Array	10916112	-	-
Affymetrix Rat Gene 1.0 ST Array	10916119	-	-
Affymetrix Rat Gene 1.0 ST Array	10916115	-	-
Affymetrix Rat Gene 1.0 ST Array	10916118	-	-
Affymetrix Rat Gene 1.1 ST Array	10916110	-	-
Rat Genome 230 2.0 Array	1387062_a_at	-	-
Rat Genome 230 2.0 Array	1387062_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1387062_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1387062_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR0800030333.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030329.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030341.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030342.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030346.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030330.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030332.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030335.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030336.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030338.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030331.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030334.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030344.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030337.rn.1	TC0800003679.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800030339.rn.1	TC0800003679.rn.1	RTA TC
Rat Expression Set 230	1387062_a_at	-	-
Rat Expression Set 230	1387062_PM_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10916110	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21987409	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1375030	-	-
RatRef-12 Expression BeadChip	ILMN_69909	-	-