Rn00589738_m1 Best Coverage

• Gene Symbol: Apoa5
• Gene Name: apolipoprotein A-V
• Gene Aliases: apo-AV, apoA-V
• Chromosome Location: Chr.8: 50559079 - 50561717 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Apoa5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001277264.1	NP_001264193.1	2 - 3	168		96
	NM_080576.2	NP_542143.1	3 - 4	208		96
	XM_006242865.2	XP_006242927.1	3 - 4	306		96
GenBank mRNA	AF202887.1	-	2 - 3	153		96
	AF202888.1	-	2 - 3	153		96
	BC089780.1	-	3 - 4	208	7371817	96
	FQ210962.1	-	2 - 3	168		96
	FQ219463.1	-	2 - 3	168		96

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0800000623.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Apoa5

Panther Classification:

Molecular Function -

apolipoprotein

Gene Ontology Categories:

Process(es)

triglyceride metabolic process
cholesterol biosynthetic process
lipid transport
response to hormone
positive regulation of cholesterol esterification
positive regulation of triglyceride catabolic process
positive regulation of very-low-density lipoprotein particle remodeling
triglyceride catabolic process
regulation of intestinal cholesterol absorption
organ regeneration
neuron projection regeneration
cholesterol efflux
phospholipid efflux
triglyceride-rich lipoprotein particle remodeling
very-low-density lipoprotein particle remodeling
high-density lipoprotein particle assembly
lipoprotein metabolic process
tissue regeneration
cholesterol homeostasis
reverse cholesterol transport
positive regulation of fatty acid biosynthetic process
phosphatidylcholine metabolic process
positive regulation of lipid catabolic process
positive regulation of lipoprotein lipase activity
acylglycerol homeostasis
triglyceride homeostasis

Function(s)

molecular_function
phospholipid binding
enzyme activator activity
heparin binding
lipid binding
cholesterol binding
cholesterol transporter activity
enzyme binding
phosphatidylcholine binding
lipase binding
low-density lipoprotein particle receptor binding
phosphatidylcholine-sterol O-acyltransferase activator activity
lipase activator activity
lipoprotein lipase activator activity
lipoprotein particle receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P700817	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	824982	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	812452	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P700817	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P700817	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P700817	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P700817	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10909731	-	-
Affymetrix Rat Gene 1.0 ST Array	10909732	-	-
Affymetrix Rat Gene 1.0 ST Array	10909730	-	-
Affymetrix Rat Gene 1.0 ST Array	10909729	-	-
Affymetrix Rat Gene 1.0 ST Array	10909728	-	-
Affymetrix Rat Gene 1.1 ST Array	10909727	-	-
Rat Genome 230 2.0 Array	1369011_at	-	-
Rat Genome 230 2.0 Array	1369011_PM_at	-	-
Affymetrix HT Rat Focus Array	1369011_PM_at	-	-
Affymetrix HT Rat Focus Array	1369011_at	-	-
Affymetrix Rat Clariom S Assay	PSR0800004045.rn.1	TC0800000623.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800004046.rn.1	TC0800000623.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800004044.rn.1	TC0800000623.rn.1	RTA TC
Rat Expression Set 230	1369011_at	-	-
Rat Expression Set 230	1369011_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10909727	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22025331	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1359395	-	-
RatRef-12 Expression BeadChip	ILMN_51589	-	-