Rn00592446_m1 Best Coverage

• Gene Symbol: Hopx
• Gene Name: HOP homeobox
• Gene Aliases: GIIg15b, Hod, Obl
• Chromosome Location: Chr.14: 33354803 - 33362547 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hopx
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_133621.2	NP_598305.2	2 - 3	259		77
GenBank mRNA	AF474162.1	-		179		77
	AF492685.1	-	2 - 3	259		77
	BC070950.1	-	1 - 2	170	7098349	77
	FQ212752.1	-	2 - 3	256		77
	FQ220854.1	-	2 - 3	258		77
	FQ221225.1	-	2 - 3	274		77
	FQ222004.1	-	2 - 3	249		77
	FQ222724.1	-	2 - 3	191		77
	FQ229425.1	-	2 - 3	244		77
	FQ229457.1	-	2 - 3	236		77
	FQ229504.1	-	2 - 3	236		77
	FQ229663.1	-	2 - 3	248		77
	FQ229876.1	-	2 - 3	236		77
	FQ229892.1	-	2 - 3	274		77
	FQ230105.1	-	1 - 2	252		77
	FQ230629.1	-	2 - 3	257		77

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1400000378.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hopx

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
trophectodermal cell differentiation
transcription, DNA-templated
heart development
regulation of heart contraction
histone deacetylation
regulation of protein binding
positive regulation of skeletal muscle tissue regeneration
negative regulation of cell differentiation
lung alveolus development
positive regulation of striated muscle cell differentiation

Function(s)

DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P404591	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	750193	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	382922	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	818318	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	604829	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	313249	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	970999	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	867209	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	116508	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P404591	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P404591	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P404591	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P404591	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	2394	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	70508	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	25675	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10772199	-	-
Affymetrix Rat Gene 1.0 ST Array	10772195	-	-
Affymetrix Rat Gene 1.0 ST Array	10772198	-	-
Affymetrix Rat Gene 1.0 ST Array	10772196	-	-
Affymetrix Rat Gene 1.1 ST Array	10772194	-	-
Rat Genome 230 2.0 Array	1367816_at	-	-
Rat Genome 230 2.0 Array	1367816_PM_at	-	-
Affymetrix HT Rat Focus Array	1367816_PM_at	-	-
Affymetrix HT Rat Focus Array	1367816_at	-	-
Affymetrix Rat Clariom S Assay	PSR1400002963.rn.1	TC1400000378.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400002969.rn.1	TC1400000378.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400002967.rn.1	TC1400000378.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400002968.rn.1	TC1400000378.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400002965.rn.1	TC1400000378.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1400002966.rn.1	TC1400000378.rn.1	RTA TC
Rat Expression Set 230	1367816_at	-	-
Rat Expression Set 230	1367816_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10772194	-	-
Rat Genome U34 Set	rc_AI102739_at	-	-
Rat Genome U34 Set	rc_AI102887_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22336986	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1363702	-	-
RatRef-12 Expression BeadChip	ILMN_51495	-	-