Rn00592528_m1 Best Coverage

• Gene Symbol: Ctsd
• Gene Name: cathepsin D
• Gene Aliases: -
• Chromosome Location: Chr.1: 215541570 - 215553446 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ctsd
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_134334.2	NP_599161.2	5 - 6	798		82
GenBank mRNA	BC062032.1	-	5 - 6	798		82
	FQ228180.1	-	1 - 2	137		82
	FQ232703.1	-	1 - 2	137		82
	X54467.1	-	5 - 6	743		82

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100006975.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ctsd

Gene Ontology Categories:

Process(es)

autophagosome assembly
proteolysis
autophagy
epithelial tube branching involved in lung morphogenesis

Function(s)

endopeptidase activity
aspartic-type endopeptidase activity
peptidase activity
peptide binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P13241	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	646631	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	929539	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	604773	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	544053	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	19480	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	611170	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	79342	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	808533	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	76818	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	753343	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	101307	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	130474	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P13241	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P13241	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P13241	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P13241	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700542409	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	29572	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	85107	-	-
Agilent Rat cDNA Microarray (G4105A)	700542409	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10726984	-	-
Affymetrix Rat Gene 1.0 ST Array	10726985	-	-
Affymetrix Rat Gene 1.0 ST Array	10726983	-	-
Affymetrix Rat Gene 1.0 ST Array	10726988	-	-
Affymetrix Rat Gene 1.0 ST Array	10726987	-	-
Affymetrix Rat Gene 1.0 ST Array	10726980	-	-
Affymetrix Rat Gene 1.0 ST Array	10726986	-	-
Affymetrix Rat Gene 1.0 ST Array	10726982	-	-
Affymetrix Rat Gene 1.0 ST Array	10726981	-	-
Affymetrix Rat Gene 1.1 ST Array	10726979	-	-
Rat Genome 230 2.0 Array	1367651_PM_at	-	-
Rat Genome 230 2.0 Array	1367651_at	-	-
Affymetrix HT Rat Focus Array	1367651_at	-	-
Affymetrix HT Rat Focus Array	1367651_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100055144.rn.1	TC0100006975.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100055145.rn.1	TC0100006975.rn.1	RTA TC
Rat Expression Set 230	1367651_PM_at	-	-
Rat Expression Set 230	1367651_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10726979	-	-
Rat Genome U34 Set	X54467_at	-	-
Rat Genome U34 Set	rc_AI235585_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20896744	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1358267	-	-
RatRef-12 Expression BeadChip	ILMN_54586	-	-