Rn00595021_m1

• Gene Symbol: Hmga1
• Gene Name: high mobility group AT-hook 1
• Gene Aliases: Hmgi, Hmgiy
• Chromosome Location: Chr.20: 7132490 - 7140155 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Hmga1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_139327.1	NP_647543.1	1 - 2	139		99
	XM_006256156.1	XP_006256218.1	2 - 3	286		99
	XM_006256157.2	XP_006256219.1	3 - 4	399		99
	XM_006256158.2	XP_006256220.1	2 - 3	328		99
	XM_006256164.1	XP_006256226.1	2 - 3	295		99
GenBank mRNA	AF507966.1	-	1 - 2	139		99

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000000292.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, 3' Most, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hmga1

Panther Classification:

Molecular Function -

endodeoxyribonuclease

Gene Ontology Categories:

Process(es)

DNA catabolic process, endonucleolytic
base-excision repair
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
spermatogenesis
negative regulation of cell proliferation
response to virus
senescence-associated heterochromatin focus assembly
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
oncogene-induced cell senescence
positive regulation of cellular senescence

Function(s)

transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
DNA binding
transcription factor activity, sequence-specific DNA binding
DNA-(apurinic or apyrimidinic site) lyase activity
transcription factor binding
enzyme binding
ligand-dependent nuclear receptor transcription coactivator activity
retinoic acid receptor binding
peroxisome proliferator activated receptor binding
retinoid X receptor binding
5'-deoxyribose-5-phosphate lyase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P018964	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	745708	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	732268	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P018964	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P018964	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P018964	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P249033	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700250711	-	-
Agilent Rat cDNA Microarray (G4105A)	700250711	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10828578	-	-
Affymetrix Rat Gene 1.0 ST Array	10828576	-	-
Affymetrix Rat Gene 1.0 ST Array	10828577	-	-
Affymetrix Rat Gene 1.1 ST Array	10828575	-	-
Rat Genome 230 2.0 Array	1388309_PM_at	-	-
Rat Genome 230 2.0 Array	1388309_at	-	-
Affymetrix Rat Clariom S Assay	PSR2000002675.rn.1	TC2000000292.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000002676.rn.1	TC2000000292.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000002677.rn.1	TC2000000292.rn.1	RTA TC
Rat Expression Set 230	1388309_at	-	-
Rat Expression Set 230	1388309_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10828575	-	-
Rat Genome U34 Set	X62875mRNA_at	-	-
Rat Genome U34 Set	X62875mRNA_g_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22070557	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1362045	-	-
RatRef-12 Expression BeadChip	ILMN_48760	-	-