Rn00596011_m1 Best Coverage

• Gene Symbol: Nr1d2
• Gene Name: nuclear receptor subfamily 1, group D, member 2
• Gene Aliases: HZF-2
• Chromosome Location: Chr.15: 8730871 - 8757165 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Nr1d2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_147210.2	NP_671743.2	5 - 6	1346		100
GenBank mRNA	U15660.1	-	4 - 5	1063		100
	U20796.1	-	4 - 5	1003		100
	X82777.1	-	5 - 6	1281		100

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1500000090.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Nuclear Receptor, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Nr1d2

Panther Classification:

Molecular Function -

C4 zinc finger nuclear receptor, DNA-binding transcription factor, zinc finger transcription factor, gene-specific transcriptional regulator

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of lipid metabolic process
regulation of circadian rhythm
steroid hormone mediated signaling pathway
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
rhythmic process
regulation of inflammatory response
lipid homeostasis
regulation of energy homeostasis
regulation of skeletal muscle cell differentiation

Function(s)

core promoter sequence-specific DNA binding
DNA binding
transcription factor activity, sequence-specific DNA binding
steroid hormone receptor activity
zinc ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P395572	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P395572	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P395572	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P395572	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P395572	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700146757	-	-
Agilent Rat cDNA Microarray (G4105A)	700146757	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10940575	-	-
Affymetrix Rat Gene 1.1 ST Array	10940575	-	-
Rat Genome 230 2.0 Array	1370540_PM_at	-	-
Rat Genome 230 2.0 Array	1370540_at	-	-
Rat Genome 230 2.0 Array	1370541_PM_at	-	-
Rat Genome 230 2.0 Array	1370541_at	-	-
Affymetrix HT Rat Focus Array	1370540_at	-	-
Affymetrix HT Rat Focus Array	1370541_PM_at	-	-
Affymetrix HT Rat Focus Array	1370540_PM_at	-	-
Affymetrix HT Rat Focus Array	1370541_at	-	-
Affymetrix Rat Clariom S Assay	PSR1500000869.rn.1	TC1500000090.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1500000868.rn.1	TC1500000090.rn.1	RTA TC
Rat Expression Set 230	1370540_PM_at	-	-
Rat Expression Set 230	1370541_PM_at	-	-
Rat Expression Set 230	1370540_at	-	-
Rat Expression Set 230	1370541_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10940575	-	-
Rat Genome U34 Set	U20796_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20818013	-	-