Rn00597319_m1 Best Coverage

• Gene Symbol: Atf5
• Gene Name: activating transcription factor 5
• Gene Aliases: -
• Chromosome Location: Chr.1: 100807821 - 100811910 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Atf5
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_172336.3	NP_758839.3	1 - 2	197		68
	XM_006228980.1	XP_006229042.1	2 - 3	475		68
GenBank mRNA	AY123225.1	-	1 - 2	197		68
	BC061786.1	-	2 - 3	475	5623784	68

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100005360.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Atf5

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
circadian rhythm
post-embryonic development
regulation of gene expression
olfactory bulb interneuron differentiation
olfactory bulb interneuron development
olfactory lobe development
multicellular organism growth
regulation of cell proliferation
negative regulation of apoptotic process
positive regulation of transcription from RNA polymerase II promoter
negative regulation of astrocyte differentiation
negative regulation of neurogenesis
regulation of cell cycle

Function(s)

RNA polymerase II regulatory region sequence-specific DNA binding
transcription factor activity, sequence-specific DNA binding
heat shock protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P052715	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	266376	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	954626	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	174703	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P052715	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P052715	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P052715	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P665879	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	12239	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10721482	-	-
Affymetrix Rat Gene 1.0 ST Array	10721484	-	-
Affymetrix Rat Gene 1.0 ST Array	10721485	-	-
Affymetrix Rat Gene 1.0 ST Array	10721483	-	-
Affymetrix Rat Gene 1.0 ST Array	10721481	-	-
Affymetrix Rat Gene 1.1 ST Array	10721480	-	-
Rat Genome 230 2.0 Array	1372601_at	-	-
Rat Genome 230 2.0 Array	1372601_PM_at	-	-
Affymetrix HT Rat Focus Array	1372601_at	-	-
Affymetrix HT Rat Focus Array	1372601_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100043346.rn.1	TC0100005360.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100043341.rn.1	TC0100005360.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100043342.rn.1	TC0100005360.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100043345.rn.1	TC0100005360.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100043344.rn.1	TC0100005360.rn.1	RTA TC
Rat Expression Set 230	1372601_at	-	-
Rat Expression Set 230	1372601_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10721480	-	-
Rat Genome U34 Set	rc_AI233425_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22156235	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1359736	-	-
RatRef-12 Expression BeadChip	ILMN_53623	-	-