Rn00668554_m1

• Gene Symbol: Casp9
• Gene Name: caspase 9, apoptosis-related cysteine peptidase
• Gene Aliases: Apaf3, Casp-9-CTD, Casp9_v1, Ice-Lap6, Mch6
• Chromosome Location: Chr.5: 160356211 - 160373774 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Casp9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_031632.1	NP_113820.1	8 - 9	1324		89
GenBank mRNA	AF262319.1	-	8 - 9	1324		89
	AF271996.1	-	8 - 9	1291		89
	AF286006.1	-	8 - 9	1324		89
	AF308469.1	-	8 - 9	1291		89
	AY027667.1	-	8 - 9	1300		89

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500001835.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Apoptosis, Protease, 3' Most, Rattus norvegicus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Casp9

Panther Classification:

Molecular Function -

protease

Gene Ontology Categories:

Process(es)

proteolysis
apoptotic process
activation of cysteine-type endopeptidase activity involved in apoptotic process
cellular response to DNA damage stimulus
aging
intrinsic apoptotic signaling pathway in response to DNA damage
response to UV
response to organic cyclic compound
response to cobalt ion
response to estradiol
response to lipopolysaccharide
glial cell apoptotic process
cellular response to UV
signal transduction in response to DNA damage
positive regulation of apoptotic process
positive regulation of neuron apoptotic process
response to antibiotic
cellular response to organic cyclic compound
cellular response to dexamethasone stimulus
regulation of response to DNA damage stimulus

Function(s)

cysteine-type endopeptidase activity
protein binding
peptidase activity
cysteine-type peptidase activity
SH3 domain binding
protein kinase binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P205127	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P238608	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	696502	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	224824	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	352644	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	802682	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	547352	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	526778	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	770601	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	185130	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	802828	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	892138	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	475741	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	746513	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	412466	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	438326	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	531688	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	80810	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	132337	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P205127	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P238608	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P205127	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P238608	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P205127	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P238608	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P238608	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P121227	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	702079263	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	72245	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	11980	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	99100	-	-
Agilent Rat cDNA Microarray (G4105A)	702079263	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10873775	-	-
Affymetrix Rat Gene 1.0 ST Array	10873785	-	-
Affymetrix Rat Gene 1.0 ST Array	10873779	-	-
Affymetrix Rat Gene 1.0 ST Array	10873784	-	-
Affymetrix Rat Gene 1.0 ST Array	10873769	-	-
Affymetrix Rat Gene 1.0 ST Array	10873780	-	-
Affymetrix Rat Gene 1.0 ST Array	10873774	-	-
Affymetrix Rat Gene 1.0 ST Array	10873778	-	-
Affymetrix Rat Gene 1.0 ST Array	10873776	-	-
Affymetrix Rat Gene 1.0 ST Array	10873771	-	-
Affymetrix Rat Gene 1.0 ST Array	10873773	-	-
Affymetrix Rat Gene 1.0 ST Array	10873783	-	-
Affymetrix Rat Gene 1.0 ST Array	10873772	-	-
Affymetrix Rat Gene 1.0 ST Array	10873770	-	-
Affymetrix Rat Gene 1.0 ST Array	10873777	-	-
Affymetrix Rat Gene 1.0 ST Array	10873781	-	-
Affymetrix Rat Gene 1.0 ST Array	10873782	-	-
Affymetrix Rat Gene 1.1 ST Array	10873768	-	-
Rat Genome 230 2.0 Array	1368652_at	-	-
Rat Genome 230 2.0 Array	1370737_at	-	-
Rat Genome 230 2.0 Array	1388083_a_at	-	-
Rat Genome 230 2.0 Array	1370737_PM_at	-	-
Rat Genome 230 2.0 Array	1388083_PM_a_at	-	-
Rat Genome 230 2.0 Array	1368652_PM_at	-	-
Affymetrix HT Rat Focus Array	1370737_at	-	-
Affymetrix HT Rat Focus Array	1388083_a_at	-	-
Affymetrix HT Rat Focus Array	1370737_PM_at	-	-
Affymetrix HT Rat Focus Array	1368652_at	-	-
Affymetrix HT Rat Focus Array	1388083_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1368652_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0500013845.rn.1	TC0500001835.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500013854.rn.1	TC0500001835.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500013846.rn.1	TC0500001835.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500013847.rn.1	TC0500001835.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500013853.rn.1	TC0500001835.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500013850.rn.1	TC0500001835.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500013851.rn.1	TC0500001835.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500013852.rn.1	TC0500001835.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500013848.rn.1	TC0500001835.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500013849.rn.1	TC0500001835.rn.1	RTA TC
Rat Expression Set 230	1370737_PM_at	-	-
Rat Expression Set 230	1388083_PM_a_at	-	-
Rat Expression Set 230	1388083_a_at	-	-
Rat Expression Set 230	1370737_at	-	-
Rat Expression Set 230	1368652_at	-	-
Rat Expression Set 230	1368652_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10873768	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20849613	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1371435	-	-
RatRef-12 Expression BeadChip	ILMN_57734	-	-