Rn00671398_g1

• Gene Symbol: Usp2
• Gene Name: ubiquitin specific peptidase 2
• Gene Aliases: UBP-t
• Chromosome Location: Chr.8: 48403986 - 48432525 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Usp2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053774.2	NP_446226.2	12 - 13	1895		58
	XM_006242861.2	XP_006242923.1	12 - 13	2056		58
	XM_006242863.2	XP_006242925.1	11 - 12	1347		58
	XM_008766138.1	XP_008764360.1	11 - 12	1196		58
	XM_008766139.1	XP_008764361.1	11 - 12	1199		58
GenBank mRNA	AF106658.1	-	11 - 12	1323		58
	AF106659.1	-	12 - 13	1895		58
	AF202453.1	-	11 - 12	1768		58
	AF202454.1	-	11 - 12	1102		58
	BC085719.1	-	12 - 13	1869		58

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0800000551.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Usp2

Gene Ontology Categories:

Process(es)

negative regulation of transcription by RNA polymerase II
regulation of transcription, DNA-templated
muscle organ development
protein deubiquitination
circadian regulation of gene expression
entrainment of circadian clock by photoperiod
proteasome-mediated ubiquitin-dependent protein catabolic process
locomotor rhythm
positive regulation of mitotic cell cycle
circadian behavior
negative regulation of skeletal muscle tissue development
positive regulation of skeletal muscle tissue development
protein stabilization
regulation of proteasomal protein catabolic process

Function(s)

cysteine-type endopeptidase activity
thiol-dependent deubiquitinase
protein binding
cyclin binding
ubiquitin protein ligase binding
identical protein binding
metal ion binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P067593	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	267864	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	371182	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	728501	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	76683	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	548689	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	249655	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	407482	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	597137	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	506539	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	712331	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	657613	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	524603	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	103396	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	698598	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	487657	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	514494	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	152499	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	812332	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	302445	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	167257	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	25239	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	157038	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	25814	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P067593	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P067593	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P067593	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P407259	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700365413	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	44541	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	91165	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	24320	-	-
Agilent Rat cDNA Microarray (G4105A)	700365413	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10909424	-	-
Affymetrix Rat Gene 1.0 ST Array	10909426	-	-
Affymetrix Rat Gene 1.0 ST Array	10909419	-	-
Affymetrix Rat Gene 1.0 ST Array	10909418	-	-
Affymetrix Rat Gene 1.0 ST Array	10909412	-	-
Affymetrix Rat Gene 1.0 ST Array	10909425	-	-
Affymetrix Rat Gene 1.0 ST Array	10909423	-	-
Affymetrix Rat Gene 1.0 ST Array	10909417	-	-
Affymetrix Rat Gene 1.0 ST Array	10909413	-	-
Affymetrix Rat Gene 1.0 ST Array	10909427	-	-
Affymetrix Rat Gene 1.0 ST Array	10909420	-	-
Affymetrix Rat Gene 1.0 ST Array	10909414	-	-
Affymetrix Rat Gene 1.0 ST Array	10909421	-	-
Affymetrix Rat Gene 1.0 ST Array	10909422	-	-
Affymetrix Rat Gene 1.1 ST Array	10909411	-	-
Rat Genome 230 2.0 Array	1387703_PM_a_at	-	-
Rat Genome 230 2.0 Array	1387703_a_at	-	-
Rat Genome 230 2.0 Array	1381811_PM_at	-	-
Rat Genome 230 2.0 Array	1381811_at	-	-
Rat Genome 230 2.0 Array	1375549_at	-	-
Rat Genome 230 2.0 Array	1375549_PM_at	-	-
Affymetrix HT Rat Focus Array	1387703_a_at	-	-
Affymetrix HT Rat Focus Array	1387703_PM_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR0800003383.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003385.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003386.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003382.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003388.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003387.rn.1	TC0800000551.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0800003381.rn.1	TC0800000551.rn.1	RTA TC
Rat Expression Set 230	1387703_a_at	-	-
Rat Expression Set 230	1387703_PM_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10909411	-	-
Rat Genome U34 Set	rc_AI031057_at	-	-
Rat Genome U34 Set	rc_AI103604_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21346147	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1358226	-	-
RatRef-12 Expression BeadChip	ILMN_65908	-	-