Rn00677839_m1 Best Coverage

• Gene Symbol: Csnk1a1
• Gene Name: casein kinase 1, alpha 1
• Gene Aliases: -
• Chromosome Location: Chr.18: 56887722 - 56910610 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Csnk1a1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053615.1	NP_446067.1	8 - 9	852		79
GenBank mRNA	BC127486.1	-		1078	8364080	79
	U77582.1	-	8 - 9	852		79

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1800000630.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Protein Kinase, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Csnk1a1

Panther Classification:

Molecular Function -

non-receptor serine/threonine protein kinase

Gene Ontology Categories:

Process(es)

cell morphogenesis
protein phosphorylation
phagocytosis
mitotic nuclear division
regulation of cell shape
Wnt signaling pathway
peptidyl-serine phosphorylation
cell division

Function(s)

magnesium ion binding
glycoprotein binding
protein kinase activity
protein serine/threonine kinase activity
ATP binding
peptide binding
phosphoprotein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P079419	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	149390	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	971872	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	316838	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	82671	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	79756	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	481635	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	934037	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	417194	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	396637	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	929131	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	770830	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	84072	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	719624	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	142567	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	375032	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	141295	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	550357	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	815217	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	885475	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	88918	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	40488	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	7108	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	92296	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P079419	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P079419	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P079419	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P12873	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P164889	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700529826	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700325233	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	15037	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	80904	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	40654	-	-
Agilent Rat cDNA Microarray (G4105A)	700325233	-	-
Agilent Rat cDNA Microarray (G4105A)	700529826	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10802121	-	-
Affymetrix Rat Gene 1.0 ST Array	10802127	-	-
Affymetrix Rat Gene 1.0 ST Array	10802115	-	-
Affymetrix Rat Gene 1.0 ST Array	10802119	-	-
Affymetrix Rat Gene 1.0 ST Array	10802125	-	-
Affymetrix Rat Gene 1.0 ST Array	10802116	-	-
Affymetrix Rat Gene 1.0 ST Array	10802123	-	-
Affymetrix Rat Gene 1.0 ST Array	10802122	-	-
Affymetrix Rat Gene 1.0 ST Array	10802118	-	-
Affymetrix Rat Gene 1.0 ST Array	10802124	-	-
Affymetrix Rat Gene 1.0 ST Array	10802126	-	-
Affymetrix Rat Gene 1.0 ST Array	10802117	-	-
Affymetrix Rat Gene 1.1 ST Array	10802114	-	-
Rat Genome 230 2.0 Array	1394818_at	-	-
Rat Genome 230 2.0 Array	1374646_PM_at	-	-
Rat Genome 230 2.0 Array	1394818_PM_at	-	-
Rat Genome 230 2.0 Array	1374392_PM_at	-	-
Rat Genome 230 2.0 Array	1381918_PM_at	-	-
Rat Genome 230 2.0 Array	1369312_PM_a_at	-	-
Rat Genome 230 2.0 Array	1389859_at	-	-
Rat Genome 230 2.0 Array	1369312_a_at	-	-
Rat Genome 230 2.0 Array	1374392_at	-	-
Rat Genome 230 2.0 Array	1374646_at	-	-
Rat Genome 230 2.0 Array	1389859_PM_at	-	-
Rat Genome 230 2.0 Array	1381918_at	-	-
Affymetrix HT Rat Focus Array	1381918_at	-	-
Affymetrix HT Rat Focus Array	1374646_at	-	-
Affymetrix HT Rat Focus Array	1389859_at	-	-
Affymetrix HT Rat Focus Array	1369312_a_at	-	-
Affymetrix HT Rat Focus Array	1381918_PM_at	-	-
Affymetrix HT Rat Focus Array	1369312_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1389859_PM_at	-	-
Affymetrix HT Rat Focus Array	1374646_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR1800004690.rn.1	TC1800000630.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800004688.rn.1	TC1800000630.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800004697.rn.1	TC1800000630.rn.1	RTA TC
Rat Expression Set 230	1369312_PM_a_at	-	-
Rat Expression Set 230	1369312_a_at	-	-
Rat Expression Set 230	1389859_at	-	-
Rat Expression Set 230	1374646_PM_at	-	-
Rat Expression Set 230	1389859_PM_at	-	-
Rat Expression Set 230	1374646_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10802114	-	-
Rat Genome U34 Set	U77583_at	-	-
Rat Genome U34 Set	rc_AI235291_at	-	-
Rat Genome U34 Set	rc_AI030738_at	-	-
Rat Genome U34 Set	rc_AA955819_at	-	-
Rat Genome U34 Set	rc_AA955819_g_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20802188	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1354478	-	-
RatRef-12 Expression BeadChip	ILMN_51884	-	-