Rn00680122_m1

• Gene Symbol: Ddx39b
• Gene Name: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
• Gene Aliases: Bat1, Bat1a, p47
• Chromosome Location: Chr.20: 4806103 - 4818596 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ddx39b
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_133300.3	NP_579834.2	4 - 5	623		81
GenBank mRNA	BC080243.1	-	4 - 5	572		81
	FQ212901.1	-	4 - 5	609		81
	M75168.1	-	3 - 4	528		81

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000001083.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ddx39b

Gene Ontology Categories:

Process(es)

spliceosomal complex assembly
mRNA splicing, via spliceosome
mRNA export from nucleus
RNA splicing
RNA secondary structure unwinding
positive regulation of DNA-templated transcription, elongation
viral mRNA export from host cell nucleus
negative regulation of DNA damage checkpoint

Function(s)

RNA binding
RNA helicase activity
ATP binding
ATP-dependent activity, acting on RNA
U6 snRNA binding
U4 snRNA binding
ATP-dependent protein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR2000009081.rn.1	TC2000001083.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000009082.rn.1	TC2000001083.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000009079.rn.1	TC2000001083.rn.1	RTA TC