Rn00680749_g1 Best Coverage

• Gene Symbol: Bsg
• Gene Name: basigin (Ok blood group)
• Gene Aliases: 5A11, CE9, EMMPRIN, HT7, Ox47R, basignin
• Chromosome Location: Chr.7: 12875536 - 12882753 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Bsg
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001109882.1	NP_001103352.1	7 - 8	1193		74
	NM_012783.3	NP_036915.1	6 - 7	845		74
GenBank mRNA	AY120888.1	-	7 - 8	1112		74
	BC059145.1	-	6 - 7	769	6889785	74
	BQ199464.1	-	1 - 2			74
	FQ212571.1	-	6 - 7	781		74
	FQ212582.1	-	6 - 7	789		74
	FQ213065.1	-	6 - 7	791		74
	FQ214193.1	-	6 - 7	781		74
	FQ214232.1	-	6 - 7	786		74
	FQ218399.1	-	6 - 7	780		74
	FQ219910.1	-	6 - 7	765		74
	FQ220920.1	-	6 - 7	789		74
	FQ224837.1	-	6 - 7	790		74
	FQ229144.1	-	6 - 7	791		74
	FQ229755.1	-	6 - 7	778		74
	FQ231850.1	-	6 - 7	791		74
	FQ232262.1	-	6 - 7	781		74
	FQ234420.1	-	6 - 7	791		74
	FQ234809.1	-	6 - 7	789		74
	X54640.1	-		972		74
	X67215.1	-	6 - 7	766		74

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700004051.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Bsg

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Process(es)

embryo implantation
odontogenesis of dentin-containing tooth
response to peptide hormone
response to mercury ion
decidualization
response to cAMP
protein targeting to plasma membrane

Function(s)

protein binding
mannose binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P013284	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	722882	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	80825	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	176139	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	479821	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	773160	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	164788	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P013284	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P013284	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P013284	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P498771	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700491717	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	702150583	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	27511	-	-
Agilent Rat cDNA Microarray (G4105A)	702150583	-	-
Agilent Rat cDNA Microarray (G4105A)	700491717	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10900807	-	-
Affymetrix Rat Gene 1.0 ST Array	10900806	-	-
Affymetrix Rat Gene 1.0 ST Array	10900809	-	-
Affymetrix Rat Gene 1.0 ST Array	10900808	-	-
Affymetrix Rat Gene 1.0 ST Array	10900810	-	-
Affymetrix Rat Gene 1.0 ST Array	10900805	-	-
Affymetrix Rat Gene 1.0 ST Array	10900811	-	-
Affymetrix Rat Gene 1.0 ST Array	10900812	-	-
Affymetrix Rat Gene 1.0 ST Array	10900804	-	-
Affymetrix Rat Gene 1.1 ST Array	10900803	-	-
Rat Genome 230 2.0 Array	1367643_PM_at	-	-
Rat Genome 230 2.0 Array	1367643_at	-	-
Affymetrix HT Rat Focus Array	1367643_PM_at	-	-
Affymetrix HT Rat Focus Array	1367643_at	-	-
Affymetrix Rat Clariom S Assay	PSR0700033257.rn.1	TC0700004051.rn.1	RTA TC
Rat Expression Set 230	1367643_at	-	-
Rat Expression Set 230	1367643_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10900803	-	-
Rat Genome U34 Set	X54640_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22021861	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1357736	-	-