Rn00689250_m1 Best Coverage

• Gene Symbol: Nfya
• Gene Name: nuclear transcription factor-Y alpha
• Gene Aliases: CBF-A
• Chromosome Location: Chr.9: 14551752 - 14577002 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Nfya
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012865.1	NP_036997.1	9 - 10	1142		81
	XM_006244409.2	XP_006244471.1	9 - 10	1167		81
	XM_006244410.1	XP_006244472.1	9 - 10	1163		81
	XM_006244411.2	XP_006244473.1	9 - 10	1157		81
	XM_006244412.2	XP_006244474.1	9 - 10	1154		81
	XM_006244413.1	XP_006244475.1	8 - 9	1075		81
	XM_008766839.1	XP_008765061.1	8 - 9	1063		81
GenBank mRNA	FQ210330.1	-	8 - 9	1080		81
	M34238.1	-	9 - 10	1142		81

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0900000164.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Nfya

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
rhythmic process
regulation of stem cell population maintenance
positive regulation of stem cell proliferation

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
core promoter sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcription cofactor binding
DNA binding
transcription factor activity, sequence-specific DNA binding
protein binding
transcription factor binding
transcription regulatory region DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P11591	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	552286	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	860549	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	7637	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	303744	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	945756	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	129986	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	659165	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	140201	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	299318	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	905079	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	855711	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	258681	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	132017	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	73240	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	58390	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	734020	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	813344	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	453392	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	775655	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	103753	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	132754	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	144051	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	10696	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	106319	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	146266	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	178927	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P11591	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P11591	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P11591	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P11591	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	38810	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	80508	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10921392	-	-
Affymetrix Rat Gene 1.0 ST Array	10921391	-	-
Affymetrix Rat Gene 1.0 ST Array	10921396	-	-
Affymetrix Rat Gene 1.0 ST Array	10921390	-	-
Affymetrix Rat Gene 1.0 ST Array	10921394	-	-
Affymetrix Rat Gene 1.0 ST Array	10921386	-	-
Affymetrix Rat Gene 1.0 ST Array	10921395	-	-
Affymetrix Rat Gene 1.0 ST Array	10921389	-	-
Affymetrix Rat Gene 1.0 ST Array	10921385	-	-
Affymetrix Rat Gene 1.0 ST Array	10921387	-	-
Affymetrix Rat Gene 1.0 ST Array	10921393	-	-
Affymetrix Rat Gene 1.0 ST Array	10921388	-	-
Affymetrix Rat Gene 1.1 ST Array	10921384	-	-
Rat Genome 230 2.0 Array	1388003_at	-	-
Rat Genome 230 2.0 Array	1388003_PM_at	-	-
Affymetrix HT Rat Focus Array	1388003_at	-	-
Affymetrix HT Rat Focus Array	1388003_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0900001330.rn.1	TC0900000164.rn.1	RTA TC
Rat Expression Set 230	1388003_PM_at	-	-
Rat Expression Set 230	1388003_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10921384	-	-
Rat Genome U34 Set	M34238_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21387522	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1374176	-	-
RatRef-12 Expression BeadChip	ILMN_62292	-	-