Rn00709612_m1 Best Coverage

• Gene Symbol: Tap1
• Gene Name: transporter 1, ATP-binding cassette, sub-family B (MDR/TAP)
• Gene Aliases: Abcb2, Cim, Tap2
• Chromosome Location: Chr.20: 3979302 - 3989669 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Tap1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_032055.4	NP_114444.2	10 - 11	2024		124
GenBank mRNA	BC101854.1	-	10 - 11	2291	7933924	124
	KC222902.1	-	10 - 11	1965		124
	KC222903.1	-	10 - 11	1965		124
	KC222904.1	-	10 - 11	1965		124
	KC222905.1	-	10 - 11	1782		124
	KC222906.1	-	10 - 11	1965		124
	X57523.1	-	10 - 11	2012		124
	Y10230.1	-	10 - 11	1965		124
	Y10231.1	-	10 - 11	1965		124
	Y10233.1	-	10 - 11	1965		124
	Y10234.1	-	10 - 11	1965		124
	Y10235.1	-	10 - 11	1965		124

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC2000000131.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, Transporter, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Tap1

Panther Classification:

Molecular Function -

ATP-binding cassette (ABC) transporter

Gene Ontology Categories:

Process(es)

defense response
metabolic process
protein transport
peptide transport
intracellular transport of viral protein in host cell
antigen processing and presentation of endogenous peptide antigen via MHC class I
protection from natural killer cell mediated cytotoxicity
cytosol to ER transport
peptide antigen transport
transmembrane transport

Function(s)

nucleotide binding
ATP binding
peptide transporter activity
peptide antigen-transporting ATPase activity
peptide-transporting ATPase activity
ATPase activity
MHC class Ib protein binding
MHC class I protein binding
peptide antigen binding
ATPase activity, coupled to transmembrane movement of substances
protein homodimerization activity
ADP binding
TAP1 binding
TAP2 binding
tapasin binding
protein heterodimerization activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P032208	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	908666	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	642870	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	691712	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	622296	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	70646	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	893862	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	418669	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	288146	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	35217	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P032208	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P032208	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P032208	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P451916	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	701191847	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	29568	-	-
Agilent Rat cDNA Microarray (G4105A)	701191847	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10831616	-	-
Affymetrix Rat Gene 1.0 ST Array	10831608	-	-
Affymetrix Rat Gene 1.0 ST Array	10831607	-	-
Affymetrix Rat Gene 1.0 ST Array	10831611	-	-
Affymetrix Rat Gene 1.0 ST Array	10831615	-	-
Affymetrix Rat Gene 1.0 ST Array	10831610	-	-
Affymetrix Rat Gene 1.0 ST Array	10831614	-	-
Affymetrix Rat Gene 1.0 ST Array	10831613	-	-
Affymetrix Rat Gene 1.0 ST Array	10831609	-	-
Affymetrix Rat Gene 1.0 ST Array	10831612	-	-
Affymetrix Rat Gene 1.0 ST Array	10831617	-	-
Affymetrix Rat Gene 1.1 ST Array	10831606	-	-
Rat Genome 230 2.0 Array	1388149_PM_at	-	-
Rat Genome 230 2.0 Array	1375379_PM_at	-	-
Rat Genome 230 2.0 Array	1375379_at	-	-
Rat Genome 230 2.0 Array	1388149_at	-	-
Affymetrix HT Rat Focus Array	1375379_PM_at	-	-
Affymetrix HT Rat Focus Array	1388149_PM_at	-	-
Affymetrix HT Rat Focus Array	1375379_at	-	-
Affymetrix HT Rat Focus Array	1388149_at	-	-
Affymetrix Rat Clariom S Assay	PSR2000001050.rn.1	TC2000000131.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR2000001051.rn.1	TC2000000131.rn.1	RTA TC
Rat Expression Set 230	1375379_at	-	-
Rat Expression Set 230	1388149_at	-	-
Rat Expression Set 230	1375379_PM_at	-	-
Rat Expression Set 230	1388149_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10831606	-	-
Rat Genome U34 Set	X57523_g_at	-	-
Rat Genome U34 Set	X57523_at	-	-
Rat Genome U34 Set	X57523_at	-	-
Rat Genome U34 Set	X57523_g_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21235791	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1374617	-	-
RatRef-12 Expression BeadChip	ILMN_68864	-	-