Rn00709977_m1 Best Coverage

• Gene Symbol: Sqstm1
• Gene Name: sequestosome 1
• Gene Aliases: Osi, ZIP, ZIP3
• Chromosome Location: Chr.10: 35704728 - 35716316 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sqstm1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_175843.4	NP_787037.2	1 - 2	232		62
	NM_181550.1	NP_853528.1	1 - 2	198		62
	XM_006246213.2	XP_006246275.1	1 - 2	254		62
	XM_006246214.2	XP_006246276.1	1 - 2	254		62
	XM_006246215.2	XP_006246277.1	1 - 2	254		62
GenBank mRNA	AF439403.1	-	1 - 2	198		62
	BC061575.1	-	1 - 2	236	6887571	62
	Y08355.1	-	1 - 2	261		62

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000002704.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sqstm1

Gene Ontology Categories:

Process(es)

positive regulation of protein phosphorylation
immune system process
ubiquitin-dependent protein catabolic process
autophagy
apoptotic process
macroautophagy
positive regulation of macroautophagy
cell differentiation
regulation of I-kappaB kinase/NF-kappaB signaling
protein heterooligomerization
regulation of mitophagy

Function(s)

protein kinase C binding
protein binding
zinc ion binding
protein kinase binding
SH2 domain binding
identical protein binding
protein homodimerization activity
ubiquitin binding
K63-linked polyubiquitin binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P149735	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P367550	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	109444	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	605972	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	50848	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	860837	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	554781	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	673955	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	854892	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	578157	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	178024	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	134860	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P149735	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P367550	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P367550	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P149735	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P367550	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P149735	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P367556	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P550423	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P367551	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P107199	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P367550	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700144738	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	701595425	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	68123	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	103137	-	-
Agilent Rat cDNA Microarray (G4105A)	700144738	-	-
Agilent Rat cDNA Microarray (G4105A)	701595425	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10742390	-	-
Affymetrix Rat Gene 1.0 ST Array	10742391	-	-
Affymetrix Rat Gene 1.0 ST Array	10742399	-	-
Affymetrix Rat Gene 1.0 ST Array	10742389	-	-
Affymetrix Rat Gene 1.0 ST Array	10742401	-	-
Affymetrix Rat Gene 1.0 ST Array	10742392	-	-
Affymetrix Rat Gene 1.0 ST Array	10742397	-	-
Affymetrix Rat Gene 1.0 ST Array	10742396	-	-
Affymetrix Rat Gene 1.0 ST Array	10742393	-	-
Affymetrix Rat Gene 1.0 ST Array	10742395	-	-
Affymetrix Rat Gene 1.0 ST Array	10742400	-	-
Affymetrix Rat Gene 1.1 ST Array	10742388	-	-
Rat Genome 230 2.0 Array	1371221_at	-	-
Rat Genome 230 2.0 Array	1378455_PM_at	-	-
Rat Genome 230 2.0 Array	1371220_at	-	-
Rat Genome 230 2.0 Array	1371221_PM_at	-	-
Rat Genome 230 2.0 Array	1378455_at	-	-
Rat Genome 230 2.0 Array	1371353_at	-	-
Rat Genome 230 2.0 Array	1389381_at	-	-
Rat Genome 230 2.0 Array	1389381_PM_at	-	-
Rat Genome 230 2.0 Array	1371353_PM_at	-	-
Rat Genome 230 2.0 Array	1371220_PM_at	-	-
Affymetrix HT Rat Focus Array	1371220_PM_at	-	-
Affymetrix HT Rat Focus Array	1371221_PM_at	-	-
Affymetrix HT Rat Focus Array	1371353_PM_at	-	-
Affymetrix HT Rat Focus Array	1371353_at	-	-
Affymetrix HT Rat Focus Array	1371221_at	-	-
Affymetrix HT Rat Focus Array	1389381_at	-	-
Affymetrix HT Rat Focus Array	1389381_PM_at	-	-
Affymetrix HT Rat Focus Array	1371220_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000023873.rn.1	TC1000002704.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000023869.rn.1	TC1000002704.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000023874.rn.1	TC1000002704.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000023871.rn.1	TC1000002704.rn.1	RTA TC
Rat Expression Set 230	1371353_PM_at	-	-
Rat Expression Set 230	1389381_PM_at	-	-
Rat Expression Set 230	1371353_at	-	-
Rat Expression Set 230	1371220_at	-	-
Rat Expression Set 230	1389381_at	-	-
Rat Expression Set 230	1371220_PM_at	-	-
Rat Expression Set 230	1371221_at	-	-
Rat Expression Set 230	1371221_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10742388	-	-
Rat Genome U34 Set	rc_AA891998_i_at	-	-
Rat Genome U34 Set	Y08355cds#2_at	-	-
Rat Genome U34 Set	AF053095_at	-	-
Rat Genome U34 Set	rc_AI180281_at	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1375496	-	-
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1376894	-	-
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1376089	-	-
RatRef-12 Expression BeadChip	ILMN_60676	-	-
RatRef-12 Expression BeadChip	ILMN_63759	-	-