Rn00710086_m1 Best Coverage

• Gene Symbol: Smug1
• Gene Name: single-strand-selective monofunctional uracil-DNA glycosylase 1
• Gene Aliases: -
• Chromosome Location: Chr.7: 144774155 - 144783655 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Smug1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_177934.3	NP_808795.1	2 - 3	479		70
	XM_006242399.2	XP_006242461.1	1 - 2	300		70
	XM_008765749.1	XP_008763971.1	2 - 3	356		70
GenBank mRNA	AY191521.1	-	2 - 3	484		70

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700003988.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Smug1

Panther Classification:

Molecular Function -

DNA metabolism protein, DNA glycosylase, nucleic acid metabolism protein

Gene Ontology Categories:

Process(es)

DNA catabolic process, endonucleolytic
DNA repair
base-excision repair

Function(s)

oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
DNA binding
uracil DNA N-glycosylase activity
single-strand selective uracil DNA N-glycosylase activity
DNA N-glycosylase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P019051	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	585200	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	173500	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	788116	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	644675	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	299883	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	55371	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P019051	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P019051	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P019051	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P21669	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10907664	-	-
Affymetrix Rat Gene 1.0 ST Array	10907662	-	-
Affymetrix Rat Gene 1.0 ST Array	10907663	-	-
Affymetrix Rat Gene 1.1 ST Array	10907659	-	-
Affymetrix Rat Clariom S Assay	PSR0700032277.rn.1	TC0700003988.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700032276.rn.1	TC0700003988.rn.1	RTA TC
Affymetrix Rat Gene 1.0 ST Array	10907659	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21926723	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1371658	-	-
RatRef-12 Expression BeadChip	ILMN_69033	-	-