Rn00755673_m1 Best Coverage

• Gene Symbol: Slc21a4
• Gene Name: kidney specific organic anion transporter
• Gene Aliases: OAT-K1, OAT-K2, Slco1a3, rOAT-K1, rOAT-K11, rOAT-K13, rOAT-K14, rOAT-K2, rOAT-K3, rOAT-K5, rOAT-K6, rOAT-K7, rOAT-K8, rOAT-K9
• Chromosome Location: Chr.4: 176255603 - 176299119 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Slc21a4
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_030837.1	NP_110464.1	11 - 12	1430		110
GenBank mRNA	AB012662.1	-	10 - 11	1319		110
	AF445993.1	-	9 - 10	1272		110
	AF445994.1	-	9 - 10	1225		110
	AF445995.1	-	9 - 10	1193		110
	AF445996.1	-	9 - 10	1097		110
	AF445997.1	-	10 - 11	1358		110
	AF445998.1	-	8 - 9	1107		110
	AF445999.1	-	7 - 8	974		110
	AF446000.1	-	7 - 8	997		110
	AF446001.1	-	7 - 8	1023		110
	AF446002.1	-	7 - 8	965		110
	AF446003.1	-	6 - 7	832		110
	AF446004.1	-	6 - 7	816		110
	AF446005.1	-	7 - 8	869		110
	AF446006.1	-	8 - 9	1130		110
	BC085730.1	-	4 - 5	512		110
	D79981.1	-	11 - 12	1430		110

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0400004024.rn.1

• Set Membership: Ambion siRNA available, Amplicon length greater than or equal to 101, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Slc21a4

Gene Ontology Categories:

Process(es)

transport
organic anion transport
xenobiotic transport
methotrexate transport

Function(s)

transporter activity
organic anion transmembrane transporter activity
methotrexate transmembrane transporter activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P123181	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P709191	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P709191	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P123181	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P709191	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P123181	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P123181	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P709191	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P407166	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P709191	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	701824179	-	-
Agilent Rat cDNA Microarray (G4105A)	701824179	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10866657	-	-
Affymetrix Rat Gene 1.0 ST Array	10866647	-	-
Affymetrix Rat Gene 1.0 ST Array	10866652	-	-
Affymetrix Rat Gene 1.0 ST Array	10866651	-	-
Affymetrix Rat Gene 1.0 ST Array	10866656	-	-
Affymetrix Rat Gene 1.0 ST Array	10866650	-	-
Affymetrix Rat Gene 1.0 ST Array	10866653	-	-
Affymetrix Rat Gene 1.0 ST Array	10866640	-	-
Affymetrix Rat Gene 1.0 ST Array	10866641	-	-
Affymetrix Rat Gene 1.0 ST Array	10866648	-	-
Affymetrix Rat Gene 1.0 ST Array	10866645	-	-
Affymetrix Rat Gene 1.0 ST Array	10866642	-	-
Affymetrix Rat Gene 1.0 ST Array	10866639	-	-
Affymetrix Rat Gene 1.0 ST Array	10866643	-	-
Affymetrix Rat Gene 1.0 ST Array	10866644	-	-
Affymetrix Rat Gene 1.0 ST Array	10866637	-	-
Affymetrix Rat Gene 1.0 ST Array	10866655	-	-
Affymetrix Rat Gene 1.0 ST Array	10866638	-	-
Affymetrix Rat Gene 1.0 ST Array	10866649	-	-
Affymetrix Rat Gene 1.0 ST Array	10866654	-	-
Affymetrix Rat Gene 1.0 ST Array	10866646	-	-
Affymetrix Rat Gene 1.1 ST Array	10866636	-	-
Rat Genome 230 2.0 Array	1387974_a_at	-	-
Rat Genome 230 2.0 Array	1387974_PM_a_at	-	-
Rat Genome 230 2.0 Array	1368498_PM_a_at	-	-
Rat Genome 230 2.0 Array	1368498_a_at	-	-
Affymetrix HT Rat Focus Array	1368498_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1387974_a_at	-	-
Affymetrix HT Rat Focus Array	1387974_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1368498_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR0400028478.rn.1	TC0400004024.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400028481.rn.1	TC0400004024.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400028479.rn.1	TC0400004024.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400028484.rn.1	TC0400004024.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400028504.rn.1	TC0400004024.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400028482.rn.1	TC0400004024.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400028486.rn.1	TC0400004024.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400028490.rn.1	TC0400004024.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400028480.rn.1	TC0400004024.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400028476.rn.1	TC0400004024.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400028491.rn.1	TC0400004024.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0400028485.rn.1	TC0400004024.rn.1	RTA TC
Rat Expression Set 230	1387974_PM_a_at	-	-
Rat Expression Set 230	1368498_PM_a_at	-	-
Rat Expression Set 230	1387974_a_at	-	-
Rat Expression Set 230	1368498_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10866636	-	-
Rat Genome U34 Set	D79981_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	20984049	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1376681	-	-