Rn00820633_g1 Best Coverage

• Gene Symbol: Ncl
• Gene Name: nucleolin
• Gene Aliases: -
• Chromosome Location: Chr.9: 93369119 - 93377643 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ncl
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_012749.2	NP_036881.2	6 - 7	1175		86
GenBank mRNA	BC085751.1	-	6 - 7	1175		86
	FJ817497.1	-	6 - 7	614		86

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0900002392.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 86 and 100, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ncl

Gene Ontology Categories:

Process(es)

angiogenesis
endocytosis
spermatogenesis
positive regulation of interleukin-6 production
positive regulation of tumor necrosis factor production
negative regulation of apoptotic process
positive regulation of transcription by RNA polymerase II
cellular response to lipopolysaccharide
liver regeneration
positive regulation of transcription of nucleolar large rRNA by RNA polymerase I
regulation of rRNA processing

Function(s)

nucleotide binding
single-stranded DNA binding
RNA binding
signaling receptor binding
calcium ion binding
protein binding
protein C-terminus binding
selenocysteine insertion sequence binding
rRNA primary transcript binding
telomeric DNA binding
histone binding
identical protein binding
laminin binding
sequence-specific DNA binding
ErbB-4 class receptor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P370213	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	240281	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	200624	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	300527	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	784713	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	834689	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	147286	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P370213	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P370213	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P370213	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P370213	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	9576	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10929573	-	-
Affymetrix Rat Gene 1.0 ST Array	10929586	-	-
Affymetrix Rat Gene 1.0 ST Array	10929579	-	-
Affymetrix Rat Gene 1.0 ST Array	10929584	-	-
Affymetrix Rat Gene 1.0 ST Array	10929582	-	-
Affymetrix Rat Gene 1.0 ST Array	10929583	-	-
Affymetrix Rat Gene 1.0 ST Array	10929577	-	-
Affymetrix Rat Gene 1.0 ST Array	10929578	-	-
Affymetrix Rat Gene 1.0 ST Array	10929580	-	-
Affymetrix Rat Gene 1.0 ST Array	10929581	-	-
Affymetrix Rat Gene 1.0 ST Array	10929585	-	-
Affymetrix Rat Gene 1.0 ST Array	10929574	-	-
Affymetrix Rat Gene 1.0 ST Array	10929576	-	-
Affymetrix Rat Gene 1.0 ST Array	10779092	-	-
Affymetrix Rat Gene 1.0 ST Array	10929587	-	-
Affymetrix Rat Gene 1.0 ST Array	10929575	-	-
Affymetrix Rat Gene 1.1 ST Array	10929572	-	-
Affymetrix Rat Gene 1.1 ST Array	10779091	-	-
Rat Genome 230 2.0 Array	1398832_PM_at	-	-
Rat Genome 230 2.0 Array	1398832_at	-	-
Affymetrix HT Rat Focus Array	1398832_PM_at	-	-
Affymetrix HT Rat Focus Array	1398832_at	-	-
Affymetrix Rat Clariom S Assay	PSR0900019615.rn.1	TC0900002392.rn.1	RTA TC
Rat Expression Set 230	1398832_at	-	-
Rat Expression Set 230	1398832_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10929572	-	-
Rat Genome U34 Set	M55015cds_s_at	-	-
Rat Genome U34 Set	M55017exon_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1360147	-	-
RatRef-12 Expression BeadChip	ILMN_48076	-	-