Rn00821096_g1

• Gene Symbol: Pfn1
• Gene Name: profilin 1
• Gene Aliases: -
• Chromosome Location: Chr.10: 57273003 - 57275708 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pfn1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_022511.2	NP_071956.2	1 - 2	253		58
GenBank mRNA	BC062405.1	-	1 - 2	253		58
	FQ217736.1	-	1 - 2	287		58
	FQ221987.1	-	1 - 2	287		58
	FQ227505.1	-	1 - 2	288		58
	FQ228171.1	-	1 - 2	287		58
	FQ232047.1	-	1 - 2	286		58
	FQ232161.1	-	1 - 2	243		58
	FQ232713.1	-	1 - 2	257		58
	FQ232749.1	-	1 - 2	252		58
	FQ235292.1	-	1 - 2	288		58
	X96967.1	-	1 - 2	136		58

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000004412.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pfn1

Gene Ontology Categories:

Process(es)

neural tube closure
regulation of transcription by RNA polymerase II
actin polymerization or depolymerization
response to organic substance
positive regulation of epithelial cell migration
negative regulation of actin filament polymerization
positive regulation of actin filament polymerization
negative regulation of actin filament bundle assembly
positive regulation of ATPase activity
positive regulation of transcription by RNA polymerase II
positive regulation of viral transcription
positive regulation of DNA metabolic process
positive regulation of stress fiber assembly
negative regulation of stress fiber assembly
cellular response to growth factor stimulus
positive regulation of ruffle assembly

Function(s)

adenyl-nucleotide exchange factor activity
RNA binding
actin binding
signaling receptor binding
protein binding
phosphatidylinositol-4,5-bisphosphate binding
proline-rich region binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P132470	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	130639	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	89214	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P132470	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P132470	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P132470	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P132470	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700544842	-	-
Agilent Rat cDNA Microarray (G4105A)	700544842	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10744497	-	-
Affymetrix Rat Gene 1.0 ST Array	10744496	-	-
Affymetrix Rat Gene 1.1 ST Array	10744494	-	-
Rat Genome 230 2.0 Array	1367605_at	-	-
Rat Genome 230 2.0 Array	1367605_PM_at	-	-
Affymetrix HT Rat Focus Array	1367605_PM_at	-	-
Affymetrix HT Rat Focus Array	1367605_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000041475.rn.1	TC1000004412.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000041480.rn.1	TC1000004412.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1000041479.rn.1	TC1000004412.rn.1	RTA TC
Rat Expression Set 230	1367605_at	-	-
Rat Expression Set 230	1367605_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10744494	-	-
Rat Genome U34 Set	rc_AA817887_at	-	-
Rat Genome U34 Set	rc_AI235687_f_at	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1371186	-	-
RatRef-12 Expression BeadChip	ILMN_66662	-	-