Rn00821107_g1

• Gene Symbol: Ptbp1
• Gene Name: polypyrimidine tract binding protein 1
• Gene Aliases: Ptb, Pybp, Pybp1, Pybp2
• Chromosome Location: Chr.7: 12663965 - 12673723 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ptbp1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001271057.1	NP_001257986.1	13 - 14	1602		65
	NM_022516.5	NP_071961.2	12 - 13	1524		65
GenBank mRNA	BC061858.1	-	13 - 14	1597		65
	X60789.1	-	12 - 13	1487		65
	X60790.1	-	9 - 10	973		65
	X74565.1	-	13 - 14	1583		65

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700002193.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ptbp1

Gene Ontology Categories:

Process(es)

regulation of alternative mRNA splicing, via spliceosome
mRNA processing
RNA splicing
negative regulation of RNA splicing
positive regulation of transcription by RNA polymerase II
negative regulation of mRNA splicing, via spliceosome
negative regulation of muscle cell differentiation
nucleic acid phosphodiester bond hydrolysis

Function(s)

nucleotide binding
single-stranded DNA binding
RNA binding
endonuclease activity
pre-mRNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P12234	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P015983	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	340210	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	338968	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	566788	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	859746	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	785893	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	84852	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	145460	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P12234	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P015983	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P015983	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P12234	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P12234	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P015983	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P470635	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P404567	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	43406	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	72436	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10900762	-	-
Affymetrix Rat Gene 1.0 ST Array	10900761	-	-
Affymetrix Rat Gene 1.0 ST Array	10900758	-	-
Affymetrix Rat Gene 1.0 ST Array	10900757	-	-
Affymetrix Rat Gene 1.0 ST Array	10900764	-	-
Affymetrix Rat Gene 1.0 ST Array	10900759	-	-
Affymetrix Rat Gene 1.0 ST Array	10900760	-	-
Affymetrix Rat Gene 1.0 ST Array	10900756	-	-
Affymetrix Rat Gene 1.0 ST Array	10900763	-	-
Affymetrix Rat Gene 1.0 ST Array	10900755	-	-
Affymetrix Rat Gene 1.0 ST Array	10900754	-	-
Affymetrix Rat Gene 1.0 ST Array	10900766	-	-
Affymetrix Rat Gene 1.0 ST Array	10900765	-	-
Affymetrix Rat Gene 1.1 ST Array	10900753	-	-
Rat Genome 230 2.0 Array	1367931_a_at	-	-
Rat Genome 230 2.0 Array	1367931_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1367931_a_at	-	-
Affymetrix HT Rat Focus Array	1367931_PM_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR0700017500.rn.1	TC0700002193.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700017495.rn.1	TC0700002193.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700017502.rn.1	TC0700002193.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700017494.rn.1	TC0700002193.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700017498.rn.1	TC0700002193.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700017499.rn.1	TC0700002193.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700017501.rn.1	TC0700002193.rn.1	RTA TC
Rat Expression Set 230	1367931_PM_a_at	-	-
Rat Expression Set 230	1367931_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10900753	-	-
Rat Genome U34 Set	rc_AA891901_g_at	-	-
Rat Genome U34 Set	X74565cds_at	-	-
Rat Genome U34 Set	rc_AA891901_at	-	-
Rat Genome U34 Set	X74565cds_g_at	-	-
Rat Genome U34 Set	rc_AA899986_s_at	-	-
Rat Genome U34 Set	rc_AA900425_s_at	-	-
Rat Genome U34 Set	rc_AI103403_s_at	-	-
Rat Genome U34 Set	X74565cds_g_at	-	-
Rat Genome U34 Set	X74565cds_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22035978	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1356425	-	-
RatRef-12 Expression BeadChip	ILMN_64497	-	-