Rn00821113_g1

• Gene Symbol: Ptbp1
• Gene Name: polypyrimidine tract binding protein 1
• Gene Aliases: Ptb, Pybp, Pybp1, Pybp2
• Chromosome Location: Chr.7: 12663965 - 12673723 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ptbp1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001271057.1	NP_001257986.1	9 - 10	1187		73
	NM_022516.5	NP_071961.2	8 - 9	1109		73
GenBank mRNA	BC061858.1	-	9 - 10	1182		73
	CK365398.1	-	5 - 6	695		73
	X60789.1	-	8 - 9	1072		73
	X60790.1	-	5 - 6	558		73
	X74565.1	-	9 - 10	1168		73

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700002193.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ptbp1

Gene Ontology Categories:

Process(es)

regulation of alternative mRNA splicing, via spliceosome
mRNA processing
RNA splicing
negative regulation of RNA splicing
positive regulation of transcription by RNA polymerase II
negative regulation of mRNA splicing, via spliceosome
negative regulation of muscle cell differentiation
nucleic acid phosphodiester bond hydrolysis

Function(s)

nucleotide binding
single-stranded DNA binding
RNA binding
endonuclease activity
pre-mRNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Clariom S Assay	PSR0700017512.rn.1	TC0700002193.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700017514.rn.1	TC0700002193.rn.1	RTA TC