Rn00821514_g1

• Gene Symbol: Tdg
• Gene Name: thymine-DNA glycosylase
• Gene Aliases: -
• Chromosome Location: Chr.7: 27194000 - 27213676 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Tdg
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_053729.1	NP_446181.1	8 - 9	1005		84
GenBank mRNA	AY026945.1	-	8 - 9	1005		84
	BC129088.1	-	8 - 9	1022	8362408	84

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700002400.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, Mammalian Gene Collection, Detect Genomic DNA, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Tdg

Panther Classification:

Molecular Function -

DNA metabolism protein, DNA glycosylase, nucleic acid metabolism protein

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
base-excision repair
mismatch repair
transcription from RNA polymerase II promoter
negative regulation of protein binding
negative regulation of chromatin binding
regulation of gene expression, epigenetic
DNA demethylation

Function(s)

RNA polymerase II transcription cofactor activity
double-stranded DNA binding
protein kinase C binding
transcription factor binding
pyrimidine-specific mismatch base pair DNA N-glycosylase activity
hydrolase activity, hydrolyzing N-glycosyl compounds
DNA N-glycosylase activity
protein domain specific binding
mismatched DNA binding
SUMO binding
protein homodimerization activity
structure-specific DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P102583	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	836120	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	719680	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	100490	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	727656	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	304033	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	961666	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	425221	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	140646	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	142209	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	565354	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	379	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	79579	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	549000	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	507533	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	155736	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	2923	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	58658	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P102583	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P102583	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P102583	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P15341	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P121015	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	46392	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	68428	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	81372	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10901467	-	-
Affymetrix Rat Gene 1.0 ST Array	10901465	-	-
Affymetrix Rat Gene 1.0 ST Array	10901460	-	-
Affymetrix Rat Gene 1.0 ST Array	10901459	-	-
Affymetrix Rat Gene 1.0 ST Array	10901464	-	-
Affymetrix Rat Gene 1.0 ST Array	10901463	-	-
Affymetrix Rat Gene 1.0 ST Array	10901468	-	-
Affymetrix Rat Gene 1.0 ST Array	10901466	-	-
Affymetrix Rat Gene 1.0 ST Array	10901462	-	-
Affymetrix Rat Gene 1.0 ST Array	10901461	-	-
Affymetrix Rat Gene 1.1 ST Array	10901458	-	-
Rat Genome 230 2.0 Array	1368268_at	-	-
Rat Genome 230 2.0 Array	1368268_PM_at	-	-
Rat Genome 230 2.0 Array	1395074_at	-	-
Rat Genome 230 2.0 Array	1395074_PM_at	-	-
Affymetrix HT Rat Focus Array	1395074_at	-	-
Affymetrix HT Rat Focus Array	1368268_at	-	-
Affymetrix HT Rat Focus Array	1368268_PM_at	-	-
Affymetrix HT Rat Focus Array	1395074_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0700019000.rn.1	TC0700002400.rn.1	RTA TC
Rat Expression Set 230	1368268_at	-	-
Rat Expression Set 230	1368268_PM_at	-	-
Rat Expression Set 230	1395074_PM_at	-	-
Rat Expression Set 230	1395074_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10901458	-	-
Rat Genome U34 Set	rc_AA996513_at	-	-
Rat Genome U34 Set	rc_AI045300_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21912755	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1356046	-	-
RatRef-12 Expression BeadChip	ILMN_66382	-	-