Rn00824644_g1 Best Coverage

• Gene Symbol: Atf4
• Gene Name: activating transcription factor 4
• Gene Aliases: -
• Chromosome Location: Chr.7: 121480723 - 121482781 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Atf4
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_024403.2	NP_077379.1	2 - 3	491		68
GenBank mRNA	AF252627.1	-	1 - 2	257		68
	BC158588.1	-	2 - 3	464	9098368	68
	FQ210065.1	-	2 - 3	491		68
	FQ213021.1	-	2 - 3	491		68
	FQ214151.1	-	2 - 3	490		68
	FQ214217.1	-	2 - 3	492		68
	FQ214457.1	-	2 - 3	490		68
	FQ216049.1	-	2 - 3	490		68
	FQ219043.1	-	2 - 3	491		68
	FQ221881.1	-	2 - 3	491		68
	FQ230257.1	-	1 - 2	119		68
	FQ232693.1	-	2 - 3	497		68

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0700004036.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Detect Genomic DNA, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Atf4

Panther Classification:

Molecular Function -

DNA-binding transcription factor

Gene Ontology Categories:

Process(es)

gluconeogenesis
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
gamma-aminobutyric acid signaling pathway
positive regulation of vascular endothelial growth factor production
circadian regulation of gene expression
response to endoplasmic reticulum stress
positive regulation of transcription from RNA polymerase II promoter in response to oxidative stress
cellular response to glucose starvation
negative regulation of potassium ion transport
positive regulation of neuron apoptotic process
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase I promoter
positive regulation of transcription from RNA polymerase II promoter
intrinsic apoptotic signaling pathway in response to endoplasmic reticulum stress
negative regulation of oxidative stress-induced neuron death
positive regulation of transcription from RNA polymerase II promoter in response to endoplasmic reticulum stress

Function(s)

RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
core promoter sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription factor binding
DNA binding
transcription factor activity, sequence-specific DNA binding
protein C-terminus binding
transcription factor binding
leucine zipper domain binding
sequence-specific DNA binding
transcription regulatory region DNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P620762	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	74213	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	973274	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P620762	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P620762	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P620762	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P620762	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	19892	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10897762	-	-
Affymetrix Rat Gene 1.0 ST Array	10897763	-	-
Affymetrix Rat Gene 1.0 ST Array	10897761	-	-
Affymetrix Rat Gene 1.1 ST Array	10897760	-	-
Rat Genome 230 2.0 Array	1367624_PM_at	-	-
Rat Genome 230 2.0 Array	1367624_at	-	-
Affymetrix HT Rat Focus Array	1367624_PM_at	-	-
Affymetrix HT Rat Focus Array	1367624_at	-	-
Affymetrix Rat Clariom S Assay	PSR0700032962.rn.1	TC0700004036.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700032963.rn.1	TC0700004036.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700032964.rn.1	TC0700004036.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700032965.rn.1	TC0700004036.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700032968.rn.1	TC0700004036.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700032967.rn.1	TC0700004036.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0700032969.rn.1	TC0700004036.rn.1	RTA TC
Rat Expression Set 230	1367624_at	-	-
Rat Expression Set 230	1367624_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10897760	-	-
Rat Genome U34 Set	rc_AI012335_at	-	-
Rat Genome U34 Set	rc_AI179381_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21827490	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1375100	-	-
RatRef-12 Expression BeadChip	ILMN_53353	-	-