Rn01179807_m1 Best Coverage

• Gene Symbol: Sfpq
• Gene Name: splicing factor proline/glutamine-rich
• Gene Aliases: -
• Chromosome Location: Chr.5: 145079803 - 145088517 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Sfpq
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001025271.1	NP_001020442.1	9 - 10	2034		71
GenBank mRNA	AF036335.1	-	5 - 6	564		71
	BC098731.1	-	9 - 10	2034	7384804	71
	FQ229853.1	-	5 - 6	576		71

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0500001487.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sfpq

Panther Classification:

Molecular Function -

RNA metabolism protein

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
alternative mRNA splicing, via spliceosome
cellular response to DNA damage stimulus
regulation of circadian rhythm
negative regulation of circadian rhythm
positive regulation of sister chromatid cohesion
negative regulation of transcription, DNA-templated
chromosome organization
regulation of cell cycle
histone H3 deacetylation
positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway

Function(s)

nucleotide binding
transcription regulatory region sequence-specific DNA binding
core promoter binding
nucleic acid binding
histone deacetylase binding
transcription regulatory region DNA binding
poly(A) RNA binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P15730	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	384600	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	727834	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	612981	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	831739	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	917682	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	854517	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	135876	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	163768	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P15730	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P15730	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P15730	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P15730	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P361357	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700301081	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700513481	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	12381	-	-
Agilent Rat cDNA Microarray (G4105A)	700513481	-	-
Agilent Rat cDNA Microarray (G4105A)	700301081	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10872106	-	-
Affymetrix Rat Gene 1.0 ST Array	10872112	-	-
Affymetrix Rat Gene 1.0 ST Array	10872107	-	-
Affymetrix Rat Gene 1.0 ST Array	10872110	-	-
Affymetrix Rat Gene 1.0 ST Array	10872111	-	-
Affymetrix Rat Gene 1.0 ST Array	10872102	-	-
Affymetrix Rat Gene 1.0 ST Array	10872104	-	-
Affymetrix Rat Gene 1.0 ST Array	10872103	-	-
Affymetrix Rat Gene 1.0 ST Array	10872108	-	-
Affymetrix Rat Gene 1.0 ST Array	10872105	-	-
Affymetrix Rat Gene 1.0 ST Array	10872109	-	-
Affymetrix Rat Gene 1.0 ST Array	10872113	-	-
Affymetrix Rat Gene 1.1 ST Array	10872101	-	-
Rat Genome 230 2.0 Array	1378595_at	-	-
Rat Genome 230 2.0 Array	1378595_PM_at	-	-
Rat Genome 230 2.0 Array	1388132_PM_at	-	-
Rat Genome 230 2.0 Array	1388132_at	-	-
Rat Genome 230 2.0 Array	1370899_at	-	-
Rat Genome 230 2.0 Array	1370899_PM_at	-	-
Affymetrix HT Rat Focus Array	1388132_PM_at	-	-
Affymetrix HT Rat Focus Array	1370899_at	-	-
Affymetrix HT Rat Focus Array	1370899_PM_at	-	-
Affymetrix HT Rat Focus Array	1388132_at	-	-
Affymetrix Rat Clariom S Assay	PSR0500010509.rn.1	TC0500001487.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0500010508.rn.1	TC0500001487.rn.1	RTA TC
Rat Expression Set 230	1370899_PM_at	-	-
Rat Expression Set 230	1388132_PM_at	-	-
Rat Expression Set 230	1388132_at	-	-
Rat Expression Set 230	1370899_at	-	-
Rat Expression Set 230	1378595_at	-	-
Rat Expression Set 230	1378595_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10872101	-	-
Rat Genome U34 Set	AF036335_g_at	-	-
Rat Genome U34 Set	AF036335_at	-	-
Rat Genome U34 Set	rc_AA956890_at	-	-
Rat Genome U34 Set	rc_AA963280_at	-	-
Rat Genome U34 Set	rc_AA964033_at	-	-
Rat Genome U34 Set	rc_AA956890_g_at	-	-
Rat Genome U34 Set	rc_AI236796_at	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1371231	-	-