Rn01190408_m1 Best Coverage

• Gene Symbol: Echdc1
• Gene Name: ethylmalonyl-CoA decarboxylase 1
• Gene Aliases: MMCD
• Chromosome Location: Chr.1: 30874410 - 30919103 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Echdc1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001007734.1	NP_001007735.1	5 - 6	628		70
	XM_006227746.2	XP_006227808.1	5 - 6	818		70
	XM_006227747.2	XP_006227809.1	5 - 6	1415		70
GenBank mRNA	BC079052.1	-	5 - 6	628	7115386	70

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100004254.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Mammalian Gene Collection, Recommended Assay, Rattus norvegicus, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Echdc1

Panther Classification:

Molecular Function -

hydratase

Gene Ontology Categories:

Process(es)

metabolic process

Function(s)

methylmalonyl-CoA decarboxylase activity
carboxy-lyase activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_44_P817696	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	28198	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	226783	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	899540	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	924808	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	66374	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	57067	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	881393	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	115772	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	545177	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	545876	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	914586	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	447689	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	678243	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	327703	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	808827	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	391885	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	111353	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	44235	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	887233	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	874639	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	17649	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	3799	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	58738	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	121554	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P817696	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_44_P817696	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_44_P817696	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P817696	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P191962	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	67475	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	99666	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	55176	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	81424	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10717417	-	-
Affymetrix Rat Gene 1.0 ST Array	10717416	-	-
Affymetrix Rat Gene 1.0 ST Array	10717414	-	-
Affymetrix Rat Gene 1.0 ST Array	10717419	-	-
Affymetrix Rat Gene 1.0 ST Array	10717420	-	-
Affymetrix Rat Gene 1.0 ST Array	10717415	-	-
Affymetrix Rat Gene 1.0 ST Array	10717418	-	-
Affymetrix Rat Gene 1.1 ST Array	10717413	-	-
Rat Genome 230 2.0 Array	1374585_PM_at	-	-
Rat Genome 230 2.0 Array	1374585_at	-	-
Affymetrix HT Rat Focus Array	1374585_PM_at	-	-
Affymetrix HT Rat Focus Array	1374585_at	-	-
Affymetrix Rat Clariom S Assay	PSR0100033949.rn.1	TC0100004254.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100033948.rn.1	TC0100004254.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100033950.rn.1	TC0100004254.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR0100033951.rn.1	TC0100004254.rn.1	RTA TC
Rat Expression Set 230	1374585_at	-	-
Rat Expression Set 230	1374585_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10717413	-	-
Rat Genome U34 Set	rc_AA851921_at	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1530351	-	-
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1373528	-	-
RatRef-12 Expression BeadChip	ILMN_54458	-	-
RatRef-12 Expression BeadChip	ILMN_161423	-	-