Sox2
Genomic Map
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| Gene Symbol: Sox2 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001109181.1 | NP_001102651.1 | 1 - 2 | 1535 | 93 | |
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Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0200000979.rn.1Set Membership: |
Amplicon length between 86 and 100
3' Most
Detect Genomic DNA
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Panther Classification:
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription from RNA polymerase II promoter
osteoblast differentiation
eye development
cell fate specification
endodermal cell fate specification
positive regulation of neuroblast proliferation
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
cell cycle arrest
sensory perception of sound
response to wounding
response to organic substance
regulation of gene expression
stem cell population maintenance
forebrain neuron differentiation
pituitary gland development
adenohypophysis development
cerebral cortex development
positive regulation of cell-cell adhesion
negative regulation of Wnt signaling pathway
male genitalia development
positive regulation of epithelial cell differentiation
forebrain development
olfactory placode formation
response to retinoic acid
somatic stem cell population maintenance
tissue regeneration
inner ear morphogenesis
regulation of cysteine-type endopeptidase activity involved in apoptotic process
positive regulation of MAPK cascade
tongue development
cell fate commitment
negative regulation of cell differentiation
positive regulation of cell differentiation
negative regulation of neuron differentiation
positive regulation of neuron differentiation
negative regulation of osteoblast differentiation
positive regulation of Notch signaling pathway
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
pigment biosynthetic process
lung alveolus development
embryonic organ development
anatomical structure formation involved in morphogenesis
neuron fate commitment
inner ear development
diencephalon morphogenesis
stem cell differentiation
negative regulation of epithelial cell proliferation
regulation of neurogenesis
detection of mechanical stimulus involved in sensory perception of sound
detection of mechanical stimulus involved in equilibrioception
retina morphogenesis in camera-type eye
lens induction in camera-type eye
epithelial tube branching involved in lung morphogenesis
response to growth factor
negative regulation of canonical Wnt signaling pathway
neuronal stem cell population maintenance
transcription regulatory region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
molecular_function
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
protein binding
transcription factor binding
miRNA binding
sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity
negative regulation of transcription from RNA polymerase II promoter
osteoblast differentiation
eye development
cell fate specification
endodermal cell fate specification
positive regulation of neuroblast proliferation
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
cell cycle arrest
sensory perception of sound
response to wounding
response to organic substance
regulation of gene expression
stem cell population maintenance
forebrain neuron differentiation
pituitary gland development
adenohypophysis development
cerebral cortex development
positive regulation of cell-cell adhesion
negative regulation of Wnt signaling pathway
male genitalia development
positive regulation of epithelial cell differentiation
forebrain development
olfactory placode formation
response to retinoic acid
somatic stem cell population maintenance
tissue regeneration
inner ear morphogenesis
regulation of cysteine-type endopeptidase activity involved in apoptotic process
positive regulation of MAPK cascade
tongue development
cell fate commitment
negative regulation of cell differentiation
positive regulation of cell differentiation
negative regulation of neuron differentiation
positive regulation of neuron differentiation
negative regulation of osteoblast differentiation
positive regulation of Notch signaling pathway
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
pigment biosynthetic process
lung alveolus development
embryonic organ development
anatomical structure formation involved in morphogenesis
neuron fate commitment
inner ear development
diencephalon morphogenesis
stem cell differentiation
negative regulation of epithelial cell proliferation
regulation of neurogenesis
detection of mechanical stimulus involved in sensory perception of sound
detection of mechanical stimulus involved in equilibrioception
retina morphogenesis in camera-type eye
lens induction in camera-type eye
epithelial tube branching involved in lung morphogenesis
response to growth factor
negative regulation of canonical Wnt signaling pathway
neuronal stem cell population maintenance
transcription regulatory region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
molecular_function
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
protein binding
transcription factor binding
miRNA binding
sequence-specific DNA binding
transcription regulatory region DNA binding
protein heterodimerization activity
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_44_P506024 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_42_P778330 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 125378 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P506024 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_42_P778330 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_44_P506024 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_42_P778330 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_44_P506024 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_42_P778330 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P506024 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10814848 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10814847 | - | - |
| Rat Genome 230 2.0 Array | 1375153_at | - | - |
| Rat Genome 230 2.0 Array | 1379942_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1389826_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1381874_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1381874_at | - | - |
| Rat Genome 230 2.0 Array | 1375153_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1389826_at | - | - |
| Rat Genome 230 2.0 Array | 1379942_at | - | - |
| Affymetrix HT Rat Focus Array | 1375153_at | - | - |
| Affymetrix HT Rat Focus Array | 1381874_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1389826_at | - | - |
| Affymetrix HT Rat Focus Array | 1381874_at | - | - |
| Affymetrix HT Rat Focus Array | 1379942_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1379942_at | - | - |
| Affymetrix HT Rat Focus Array | 1375153_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1389826_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0200006008.rn.1 | TC0200000979.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0200006006.rn.1 | TC0200000979.rn.1 | RTA TC |
| Rat Expression Set 230 | 1389826_at | - | - |
| Rat Expression Set 230 | 1375153_PM_at | - | - |
| Rat Expression Set 230 | 1389826_PM_at | - | - |
| Rat Expression Set 230 | 1375153_at | - | - |
| Rat Expression Set 230 | 1379942_PM_at | - | - |
| Rat Expression Set 230 | 1381874_at | - | - |
| Rat Expression Set 230 | 1381874_PM_at | - | - |
| Rat Expression Set 230 | 1379942_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10814847 | - | - |
| Rat Genome U34 Set | rc_AI102567_at | - | - |
| Rat Genome U34 Set | rc_AA858564_at | - | - |
| Rat Genome U34 Set | rc_AI111954_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 21982763 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1373901 | - | - |
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