Rn01301794_m1

• Gene Symbol: Thra
• Gene Name: thyroid hormone receptor alpha
• Gene Aliases: ERBA1, Thra1, c-erbA-1
• Chromosome Location: Chr.10: 86657285 - 86684935 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Thra
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001017960.1	NP_001017960.1	6 - 7	1009		65
	NM_031134.2	NP_112396.2	5 - 6	877		65
GenBank mRNA	CB728734.1	-	2 - 3	358		65
	M18028.1	-	6 - 7	899		65
	M31174.1	-		1091		65
	M31177.1	-	1 - 2	218		65
	X07409.1	-	4 - 5	538		65
	X12744.1	-	5 - 6	541		65

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1000001586.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, Nuclear Receptor, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Thra

Panther Classification:

Molecular Function -

C4 zinc finger nuclear receptor, DNA-binding transcription factor, zinc finger transcription factor, gene-specific transcriptional regulator

Gene Ontology Categories:

Process(es)

cartilage condensation
ossification
kidney development
liver development
regulation of thyroid hormone mediated signaling pathway
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
brain development
learning or memory
regulation of heart contraction
female courtship behavior
response to cold
hormone-mediated signaling pathway
organ morphogenesis
positive regulation of myotube differentiation
negative regulation of RNA polymerase II transcriptional preinitiation complex assembly
erythrocyte differentiation
lung development
adrenal gland development
intracellular receptor signaling pathway
thyroid gland development
response to nutrient levels
regulation of myeloid cell apoptotic process
response to drug
cytoplasmic sequestering of transcription factor
steroid hormone mediated signaling pathway
negative regulation of sequence-specific DNA binding transcription factor activity
negative regulation of transcription, DNA-templated
positive regulation of female receptivity
positive regulation of transcription from RNA polymerase II promoter
digestive tract development
embryonic organ development
regulation of lipid catabolic process
Type I pneumocyte differentiation
negative regulation of DNA-templated transcription, initiation

Function(s)

steroid receptor RNA activator RNA binding
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
steroid hormone receptor activity
single-stranded RNA binding
RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
thyroid hormone receptor activity
transcription factor binding
zinc ion binding
TBP-class protein binding
protein domain specific binding
chromatin DNA binding
protein complex binding
protein homodimerization activity
sequence-specific DNA binding
transcription regulatory region DNA binding
intronic transcription regulatory region DNA binding
protein heterodimerization activity
protein dimerization activity
thyroid hormone binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P12534	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	637405	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	702438	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	273407	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	349710	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	1443	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	206988	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	3839	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	951059	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	392718	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	963224	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	262456	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	92536	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	90360	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	742866	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	298984	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	454934	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	286257	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	679880	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	529311	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	150932	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	813287	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	963284	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	264627	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	123093	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	749956	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	871498	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	45614	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	72887	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	141819	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	121303	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	179571	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	11314	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	97210	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	58328	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P12534	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P12534	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P12534	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P12534	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700517082	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	700923067	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	33015	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	79778	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	67372	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	75486	-	-
Agilent Rat cDNA Microarray (G4105A)	700517082	-	-
Agilent Rat cDNA Microarray (G4105A)	700923067	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10738059	-	-
Affymetrix Rat Gene 1.0 ST Array	10738064	-	-
Affymetrix Rat Gene 1.0 ST Array	10738067	-	-
Affymetrix Rat Gene 1.0 ST Array	10746958	-	-
Affymetrix Rat Gene 1.0 ST Array	10738060	-	-
Affymetrix Rat Gene 1.0 ST Array	10738063	-	-
Affymetrix Rat Gene 1.0 ST Array	10738066	-	-
Affymetrix Rat Gene 1.0 ST Array	10738068	-	-
Affymetrix Rat Gene 1.0 ST Array	10738065	-	-
Affymetrix Rat Gene 1.0 ST Array	10746957	-	-
Affymetrix Rat Gene 1.0 ST Array	10738057	-	-
Affymetrix Rat Gene 1.0 ST Array	10738062	-	-
Affymetrix Rat Gene 1.0 ST Array	10738058	-	-
Affymetrix Rat Gene 1.0 ST Array	10738061	-	-
Affymetrix Rat Gene 1.0 ST Array	10738070	-	-
Affymetrix Rat Gene 1.0 ST Array	10738069	-	-
Affymetrix Rat Gene 1.1 ST Array	10738056	-	-
Affymetrix Rat Gene 1.1 ST Array	10746955	-	-
Rat Genome 230 2.0 Array	1380518_s_at	-	-
Rat Genome 230 2.0 Array	1395928_at	-	-
Rat Genome 230 2.0 Array	1370691_a_at	-	-
Rat Genome 230 2.0 Array	1395928_PM_at	-	-
Rat Genome 230 2.0 Array	1367726_PM_at	-	-
Rat Genome 230 2.0 Array	1367726_at	-	-
Rat Genome 230 2.0 Array	1370691_PM_a_at	-	-
Rat Genome 230 2.0 Array	1380518_PM_s_at	-	-
Affymetrix HT Rat Focus Array	1370691_a_at	-	-
Affymetrix HT Rat Focus Array	1367726_at	-	-
Affymetrix HT Rat Focus Array	1380518_s_at	-	-
Affymetrix HT Rat Focus Array	1370691_PM_a_at	-	-
Affymetrix HT Rat Focus Array	1367726_PM_at	-	-
Affymetrix HT Rat Focus Array	1380518_PM_s_at	-	-
Affymetrix Rat Clariom S Assay	PSR1000014083.rn.1	TC1000001586.rn.1	RTA TC
Rat Expression Set 230	1370691_PM_a_at	-	-
Rat Expression Set 230	1367726_at	-	-
Rat Expression Set 230	1367726_PM_at	-	-
Rat Expression Set 230	1370691_a_at	-	-
Rat Expression Set 230	1380518_s_at	-	-
Rat Expression Set 230	1380518_PM_s_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10738056	-	-
Rat Genome U34 Set	X12744_at	-	-
Rat Genome U34 Set	M31174_g_at	-	-
Rat Genome U34 Set	M31174_at	-	-
Rat Genome U34 Set	rc_AA997529_r_at	-	-
Rat Genome U34 Set	rc_AA997529_i_at	-	-
Rat Genome U34 Set	rc_AA997529_s_at	-	-
Rat Genome U34 Set	M31174_at	-	-
Rat Genome U34 Set	rc_AA997529_s_at	-	-
Rat Genome U34 Set	M31174_g_at	-	-
Rat Genome U34 Set	X12744_at	-	-
Rat Genome U34 Set	M31174_g_at	-	-
Rat Genome U34 Set	M31174_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21613212	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1354266	-	-
RatRef-12 Expression BeadChip	ILMN_67298	-	-