Rn01316994_m1 Best Coverage

• Gene Symbol: Pitx2
• Gene Name: paired-like homeodomain 2
• Gene Aliases: Pitx-2, Pitx2c, Ptx2
• Chromosome Location: Chr.2: 233602732 - 233621055 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Pitx2
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001042505.1	NP_001035970.1	2 - 3	755		58
	NM_019334.2	NP_062207.1	3 - 4	456		58
GenBank mRNA	AF039832.1	-	3 - 4	456		58
	AJ222971.1	-	2 - 3	763		58
	AJ222972.1	-	3 - 4	509		58
	EF519321.1	-	2 - 3	245		58

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0200002176.rn.1

• Set Membership: Ambion siRNA available, Amplicon length less than or equal to 70, 3' Most, Recommended Assay, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pitx2

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Process(es)

negative regulation of transcription from RNA polymerase II promoter
patterning of blood vessels
vasculogenesis
in utero embryonic development
neuron migration
extraocular skeletal muscle development
atrioventricular valve development
cardiac neural crest cell migration involved in outflow tract morphogenesis
pulmonary myocardium development
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
determination of left/right symmetry
brain development
heart development
skeletal muscle tissue development
myoblast fusion
male gonad development
female gonad development
anatomical structure morphogenesis
response to hormone
organ morphogenesis
Wnt signaling pathway
subthalamic nucleus development
hypothalamus cell migration
pituitary gland development
neuron differentiation
lung development
regulation of cell migration
embryonic camera-type eye development
response to vitamin A
embryonic hindlimb morphogenesis
vascular smooth muscle cell differentiation
deltoid tuberosity development
regulation of cell proliferation
odontogenesis of dentin-containing tooth
odontogenesis
camera-type eye development
positive regulation of DNA binding
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
spleen development
embryonic digestive tract morphogenesis
cardiac muscle tissue development
cardiac muscle cell differentiation
atrial cardiac muscle tissue morphogenesis
ventricular cardiac muscle cell development
digestive system development
ventricular septum morphogenesis
left lung morphogenesis
pulmonary vein morphogenesis
superior vena cava morphogenesis
endodermal digestive tract morphogenesis
iris morphogenesis
cell proliferation involved in outflow tract morphogenesis
left/right axis specification
positive regulation of myoblast proliferation

Function(s)

transcription regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription factor binding
RNA polymerase II activating transcription factor binding
RNA polymerase II transcription coactivator activity
transcriptional repressor activity, RNA polymerase II transcription factor binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
transcription factor binding
chromatin DNA binding
identical protein binding
protein homodimerization activity
sequence-specific DNA binding
phosphoprotein binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P072648	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	464687	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	492168	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	512535	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	434479	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	704058	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	913644	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	120346	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	213265	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	314441	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	248368	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	523503	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	287663	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	877262	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	758388	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	896757	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	385735	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	314515	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	938911	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	21436	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	9075	-	-
Agilent SurePrint G3 Rat CGH Microarray 4x180K	91667	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P072648	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P072648	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P072648	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P718970	-	-
Matsumoto (Agilent Rat cDNA Microarray G4105A)	702076272	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	74096	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	22760	-	-
Agilent Rat cDNA Microarray (G4105A)	702076272	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10818997	-	-
Affymetrix Rat Gene 1.0 ST Array	10818994	-	-
Affymetrix Rat Gene 1.0 ST Array	10818996	-	-
Affymetrix Rat Gene 1.0 ST Array	10818990	-	-
Affymetrix Rat Gene 1.0 ST Array	10818993	-	-
Affymetrix Rat Gene 1.0 ST Array	10818991	-	-
Affymetrix Rat Gene 1.0 ST Array	10818995	-	-
Affymetrix Rat Gene 1.1 ST Array	10818989	-	-
Rat Genome 230 2.0 Array	1368785_PM_a_at	-	-
Rat Genome 230 2.0 Array	1368785_a_at	-	-
Affymetrix HT Rat Focus Array	1368785_a_at	-	-
Affymetrix HT Rat Focus Array	1368785_PM_a_at	-	-
Affymetrix Rat Clariom S Assay	PSR0200015066.rn.1	TC0200002176.rn.1	RTA TC
Rat Expression Set 230	1368785_a_at	-	-
Rat Expression Set 230	1368785_PM_a_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10818989	-	-
Rat Genome U34 Set	AF039832_g_at	-	-
Rat Genome U34 Set	AF039832_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21740405	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1369098	-	-
RatRef-12 Expression BeadChip	ILMN_64864	-	-