Hdac1l
Genomic Map
Back To TopAssay Details
| Gene Symbol: Hdac1l | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_053446.1 | NP_445898.1 | 1 | 1051 | 82 | |
| Gene Symbol: Hdac1 | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_001025409.1 | NP_001020580.1 | 10 | 1063 | 82 | |
| GenBank mRNA | BC059156.1 | - | 10 | 1080 | 82 | |
| BC097943.1 | - | 10 | 1063 | 7458532 | 82 | |
| BC107476.1 | - | 10 | 1060 | 7443793 | 82 | |
Back To TopMore Information
Additional Information:
Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.
Set Membership: |
Ambion siRNA available
Amplicon length between 71 and 85
3' Most
Mammalian Gene Collection
Detect Genomic DNA
Rattus norvegicus
1700
Inventoried
Amplicon spans exons and probe does not span exons
|
Matching Ambion siRNAs:
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
biological_process
positive regulation of cell proliferation
positive regulation of receptor biosynthetic process
circadian regulation of gene expression
ATP-dependent chromatin remodeling
negative regulation by host of viral transcription
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
negative regulation of androgen receptor signaling pathway
histone H3-K9 modification
histone H3 deacetylation
histone H4 deacetylation
response to amphetamine
protein deacetylation
endoderm development
circadian rhythm
negative regulation of cell proliferation
epidermal cell differentiation
negative regulation of myotube differentiation
histone deacetylation
hippocampus development
neuron differentiation
response to caffeine
response to lipopolysaccharide
positive regulation of interleukin-1 production
positive regulation of tumor necrosis factor production
cellular response to oxidative stress
odontogenesis of dentin-containing tooth
response to drug
positive regulation of tyrosine phosphorylation of Stat3 protein
embryonic digit morphogenesis
negative regulation of apoptotic process
negative regulation of I-kappaB kinase/NF-kappaB signaling
negative regulation of neuron apoptotic process
positive regulation of transcription, DNA-templated
negative regulation of insulin secretion
positive regulation of oligodendrocyte differentiation
response to hyperoxia
hair follicle placode formation
eyelid development in camera-type eye
fungiform papilla formation
cellular response to tumor necrosis factor
negative regulation of canonical Wnt signaling pathway
positive regulation of chemokine (C-X-C motif) ligand 2 production
positive regulation of type B pancreatic cell apoptotic process
negative regulation of peptidyl-lysine acetylation
negative regulation of intrinsic apoptotic signaling pathway
transcription regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
core promoter binding
RNA polymerase II repressing transcription factor binding
RNA polymerase II transcription corepressor activity
molecular_function
histone deacetylase activity
deacetylase activity
nucleosomal DNA binding
NAD-dependent histone deacetylase activity (H3-K14 specific)
activating transcription factor binding
histone deacetylase binding
NAD-dependent histone deacetylase activity (H3-K9 specific)
NAD-dependent histone deacetylase activity (H4-K16 specific)
NAD-dependent histone deacetylase activity (H3-K18 specific)
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
transcription corepressor activity
protein binding
transcription factor binding
enzyme binding
protein complex binding
protein deacetylase activity
Krueppel-associated box domain binding
transcription regulatory region DNA binding
protein N-terminus binding
repressing transcription factor binding
negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
biological_process
positive regulation of cell proliferation
positive regulation of receptor biosynthetic process
circadian regulation of gene expression
ATP-dependent chromatin remodeling
negative regulation by host of viral transcription
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
negative regulation of androgen receptor signaling pathway
histone H3-K9 modification
histone H3 deacetylation
histone H4 deacetylation
response to amphetamine
protein deacetylation
endoderm development
circadian rhythm
negative regulation of cell proliferation
epidermal cell differentiation
negative regulation of myotube differentiation
histone deacetylation
hippocampus development
neuron differentiation
response to caffeine
response to lipopolysaccharide
positive regulation of interleukin-1 production
positive regulation of tumor necrosis factor production
cellular response to oxidative stress
odontogenesis of dentin-containing tooth
response to drug
positive regulation of tyrosine phosphorylation of Stat3 protein
embryonic digit morphogenesis
negative regulation of apoptotic process
negative regulation of I-kappaB kinase/NF-kappaB signaling
negative regulation of neuron apoptotic process
positive regulation of transcription, DNA-templated
negative regulation of insulin secretion
positive regulation of oligodendrocyte differentiation
response to hyperoxia
hair follicle placode formation
eyelid development in camera-type eye
fungiform papilla formation
cellular response to tumor necrosis factor
negative regulation of canonical Wnt signaling pathway
positive regulation of chemokine (C-X-C motif) ligand 2 production
positive regulation of type B pancreatic cell apoptotic process
negative regulation of peptidyl-lysine acetylation
negative regulation of intrinsic apoptotic signaling pathway
transcription regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
core promoter binding
RNA polymerase II repressing transcription factor binding
RNA polymerase II transcription corepressor activity
molecular_function
histone deacetylase activity
deacetylase activity
nucleosomal DNA binding
NAD-dependent histone deacetylase activity (H3-K14 specific)
activating transcription factor binding
histone deacetylase binding
NAD-dependent histone deacetylase activity (H3-K9 specific)
NAD-dependent histone deacetylase activity (H4-K16 specific)
NAD-dependent histone deacetylase activity (H3-K18 specific)
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
transcription corepressor activity
protein binding
transcription factor binding
enzyme binding
protein complex binding
protein deacetylase activity
Krueppel-associated box domain binding
transcription regulatory region DNA binding
protein N-terminus binding
repressing transcription factor binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P118296 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P055758 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P122452 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 481123 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 486373 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 385763 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 277395 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 706241 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 183665 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 117987 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 927450 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 972142 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 714971 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 132559 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 333428 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 920922 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 663252 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 558942 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 943472 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 432256 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 957496 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 344691 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 782646 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 270752 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 89968 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 138208 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 108273 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P122452 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P118296 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P055758 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P118296 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P055758 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P122452 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P118296 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P122452 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P055758 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P400400 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 1764 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 58340 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 99493 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10880017 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10880016 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10880015 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10880013 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10929262 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10880018 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10880020 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10880014 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10880019 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10880012 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10929261 | - | - |
| Rat Genome 230 2.0 Array | 1396820_at | - | - |
| Rat Genome 230 2.0 Array | 1388761_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1396820_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1388761_at | - | - |
| Affymetrix HT Rat Focus Array | 1388761_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1388761_at | - | - |
| Affymetrix HT Rat Focus Array | 1396820_PM_at | - | - |
| Affymetrix HT Rat Focus Array | 1396820_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0500027362.rn.1 | TC0500003672.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0500027363.rn.1 | TC0500003672.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0500027366.rn.1 | TC0500003672.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0500027367.rn.1 | TC0500003672.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0500027364.rn.1 | TC0500003672.rn.1 | RTA TC |
| Affymetrix Rat Clariom S Assay | PSR0500027365.rn.1 | TC0500003672.rn.1 | RTA TC |
| Rat Expression Set 230 | 1388761_PM_at | - | - |
| Rat Expression Set 230 | 1388761_at | - | - |
| Rat Expression Set 230 | 1396820_PM_at | - | - |
| Rat Expression Set 230 | 1396820_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10880012 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10929261 | - | - |
| Rat Genome U34 Set | rc_AA818418_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 20758494 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1357565 | - | - |
Back To Top