Rn01400118_g1

• Gene Symbol: Ccl20
• Gene Name: chemokine (C-C motif) ligand 20
• Gene Aliases: ST38, Scya20
• Chromosome Location: Chr.9: 88918357 - 88921011 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Ccl20
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_019233.1	NP_062106.1	3 - 4	325		82
	XM_006245164.2	XP_006245226.1	3 - 4	391		82
GenBank mRNA	AF053312.1	-	3 - 4	326		82
	U90447.1	-	3 - 4	325		82

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0900001001.rn.1

• Set Membership: Ambion siRNA available, Amplicon length between 71 and 85, 3' Most, Detect Genomic DNA, Rattus norvegicus, 1700, Inventoried, Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ccl20

Panther Classification:

Molecular Function -

cytokine, intercellular signal molecule

Gene Ontology Categories:

Process(es)

chemotaxis
inflammatory response
immune response
wound healing
positive regulation of interleukin-1 alpha biosynthetic process
positive regulation of nitric-oxide synthase biosynthetic process
cell chemotaxis
cellular response to lipopolysaccharide
cellular response to lipoteichoic acid
cellular response to organic substance
positive regulation of T cell migration

Function(s)

cytokine activity
chemokine activity

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_43_P11985	-	-
Agilent Whole Rat Genome Microarray 4x44K v2	A_64_P157743	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	707922	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P157743	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P11985	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_43_P11985	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_64_P157743	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_64_P157743	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_43_P11985	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_43_P11985	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	19974	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10924782	-	-
Affymetrix Rat Gene 1.0 ST Array	10924784	-	-
Affymetrix Rat Gene 1.0 ST Array	10924783	-	-
Affymetrix Rat Gene 1.0 ST Array	10924781	-	-
Affymetrix Rat Gene 1.1 ST Array	10924780	-	-
Rat Genome 230 2.0 Array	1369814_at	-	-
Rat Genome 230 2.0 Array	1369814_PM_at	-	-
Affymetrix HT Rat Focus Array	1369814_at	-	-
Affymetrix HT Rat Focus Array	1369814_PM_at	-	-
Affymetrix Rat Clariom S Assay	PSR0900008460.rn.1	TC0900001001.rn.1	RTA TC
Rat Expression Set 230	1369814_at	-	-
Rat Expression Set 230	1369814_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10924780	-	-
Rat Genome U34 Set	AF053312_s_at	-	-
Rat Genome U34 Set	AF053312_s_at	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	21035433	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1365213	-	-
RatRef-12 Expression BeadChip	ILMN_54137	-	-