Rn01402333_m1

• Gene Symbol: Polr2d
• Gene Name: polymerase (RNA) II (DNA directed) polypeptide D
• Gene Aliases: -
• Chromosome Location: Chr.18: 24570762 - 24577894 on Build Rnor_6.0
• Species: Rat
• Species Specific ID (Flybase ID): -

Assay Details

Gene Symbol: Polr2d
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001108886.1	NP_001102356.1	3 - 4	400		66
GenBank mRNA	FQ228021.1	-	3 - 4	371		66
	FQ233353.1	-	3 - 4	367		66

More Information

Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1800000217.rn.1

• Set Membership: Amplicon length less than or equal to 70, 3' Most, Rattus norvegicus, 1700, Probe spans exons

Panther Classification:

Molecular Function -

DNA-directed RNA polymerase

Gene Ontology Categories:

Process(es)

nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
transcription from RNA polymerase II promoter
transcription initiation from RNA polymerase II promoter
biological_process
mRNA export from nucleus in response to heat stress
recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
positive regulation of translational initiation

Function(s)

nucleotide binding
molecular_function
single-stranded DNA binding
single-stranded RNA binding
DNA-directed RNA polymerase activity
translation initiation factor binding

MicroArray Probes:

Array Name	Probe IDs	Targets	Target Type
Agilent Whole Rat Genome Microarray 4x44K v2	A_42_P468662	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	845387	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	880780	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	126622	-	-
Agilent SurePrint G3 Rat CGH Microarray 1x1M	392929	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P468662	-	-
Agilent Whole Rat Genome Microarray 4x44K v3	A_42_P468662	-	-
Agilent SurePrint G3 Rat GE 8x60K Microarray	A_42_P468662	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_44_P426734	-	-
SurePrint G3 Rat Gene Expression Microarray G4131A	A_42_P468662	-	-
Agilent Rat Genome CGH Microarray 105A (G4436A)	102221	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Rat Gene 1.0 ST Array	10800669	-	-
Affymetrix Rat Gene 1.0 ST Array	10800668	-	-
Affymetrix Rat Gene 1.0 ST Array	10800671	-	-
Affymetrix Rat Gene 1.0 ST Array	10800670	-	-
Affymetrix Rat Gene 1.1 ST Array	10800667	-	-
Rat Genome 230 2.0 Array	1382042_PM_at	-	-
Rat Genome 230 2.0 Array	1392488_at	-	-
Rat Genome 230 2.0 Array	1379832_at	-	-
Rat Genome 230 2.0 Array	1382042_at	-	-
Rat Genome 230 2.0 Array	1392488_PM_at	-	-
Rat Genome 230 2.0 Array	1379832_PM_at	-	-
Affymetrix HT Rat Focus Array	1379832_PM_at	-	-
Affymetrix HT Rat Focus Array	1379832_at	-	-
Affymetrix Rat Clariom S Assay	PSR1800001463.rn.1	TC1800000217.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800001462.rn.1	TC1800000217.rn.1	RTA TC
Affymetrix Rat Clariom S Assay	PSR1800001464.rn.1	TC1800000217.rn.1	RTA TC
Rat Expression Set 230	1379832_at	-	-
Rat Expression Set 230	1379832_PM_at	-	-
Affymetrix Rat Gene 1.0 ST Array	10800667	-	-

Array Name	Probe IDs	Targets	Target Type
ABI Rat Genome Survey Microarray	22347513	-	-

Array Name	Probe IDs	Targets	Target Type
Illumina ratRef-12 v1.0 expression beadchip	ILMN_1370347	-	-